FC921642

Overview
NameFC921642
Unique NameFC921642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14244 contig Ccv1_Contig14244:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921642 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.775e-80
Identity = 143/213 (67.14%), Postives = 176/213 (82.63%), Query Frame = 1
Query:   85 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSS-----FTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGL-FKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKVGFDDAFHYKEET 705
            + +NKQVI K++V GFPKE+D     +++ L+V EGS ++LVKNLYLSCDPYMR+RM     PD SS     + PG PI G+GV++V++SGHP++KKGDL+WG  GWEEYS+I     + FKI HTDVPLSYYTG+LGMPGMTA+AGFYE+C+PKKGE +YVSAASGAVGQLVGQFAK+MGCYVVGSAGS+EKV+LLK K GFDDAF+YKEE+
Sbjct:    1 MTTNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSKSVLVKNLYLSCDPYMRSRMG---KPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEES 210          
BLAST of FC921642 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.502e-79
Identity = 139/210 (66.19%), Postives = 174/210 (82.86%), Query Frame = 1
Query:   91 SNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSS----FTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKN-PQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKVGFDDAFHYKEET 705
            +NKQVILK+YV GFP E+D     +++ L+V EG+N++LVKNLYLSCDPYMR RM    DP  ++    +TPG PI+G+GV+++++SGHP++KKGDL+WG   WEEYS+I       FKI HTDVPLSYYTG+LGMPGMTA+AGFYE+C+PK+GE +YVSAASGAVGQLVGQ AK+MGCYVVGSAGS+EKV+LLK K GFDDAF+YKEE+
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMG-KPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEES 212          
BLAST of FC921642 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.378e-32
Identity = 83/202 (41.09%), Postives = 113/202 (55.94%), Query Frame = 1
Query:   91 SNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKVGFDDAFHYK 696
            S +Q+ L    +G P   D   +   +    E     +LVK LY+S DPYMR RM   +      F     + G  +A+VV  G+   KKGD+V G   W+E+S +     L KI  +  P S Y GILGM G+TA+ G  +I  PK+GE + VS A+GAVG  VGQ AK+ G  VVG AGS EK++ LK ++ FD+A +YK
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFETIPVP---EPKQGEVLVKTLYVSVDPYMRGRMQDTKSY-VEPFALDKALSGGVIAEVVSDGN-HLKKGDIVIGNLSWQEFSAVSE-SALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYK 199          
BLAST of FC921642 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 91/221 (41.18%), Postives = 127/221 (57.47%), Query Frame = 1
Query:   85 VVSNKQVILKNYVE---GFPKETDMLV----KASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP----GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI-KNPQGLFKIHHTD--VPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKVGFDDAFHYKEET 705
            +VSN  VI+K Y++   G+P   + L     +    + +V+E    +L+KN+Y S DPY+R RM   Q P  +S+ P    G P     VAKVV S   ++K G  V   +GWEEY+ + K   G  +  +    +PL  + G LGMP  TA+ G   I  PK GE IY+SAASGAVGQ+ GQ AK MG +VVGS GS EK ++  +  G+D  F+YK+E+
Sbjct:    1 MVSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDE-ETPVLLKNIYTSVDPYLRMRM---QSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKKES 216          
BLAST of FC921642 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 87/207 (42.03%), Postives = 118/207 (57.00%), Query Frame = 1
Query:   85 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIH---HTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKVGFDDAFHYK 696
            +V  K   LK + EGFP + +  +K + +       +  +L++ L+LS DPYMR                G  + G  VA+VV+S +  F KG +V    GW  +S I +  GL K+       +PLS   G +GMPG+TA+ G  +IC  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K+GFD AF+YK
Sbjct:    1 MVQAKSWTLKKHFEGFPTDGNFELKTTELP---PLNNGEVLLEALFLSVDPYMRVAAK--------KLKEGDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHS-ISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYK 194          
BLAST of FC921642 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.290e-30
Identity = 84/207 (40.58%), Postives = 118/207 (57.00%), Query Frame = 1
Query:   85 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHT---DVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKVGFDDAFHYK 696
            +V  K   LK + EGFP +++  ++ + +       +  +L++ L+LS DPYMR                G  + G  VA+VV+S +  F  G +V    GW  +S I +  GL K+       +PLS   G +GMPG+TA+ G  +IC  K GE + V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K+GFD AF+YK
Sbjct:    1 MVQAKTWTLKKHFEGFPTDSNFELRTTELP---PLNNGEVLLEALFLSVDPYMRVAAK--------KLKEGDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHS-ISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYK 194          
BLAST of FC921642 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.290e-30
Identity = 82/206 (39.81%), Postives = 117/206 (56.80%), Query Frame = 1
Query:   85 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQ--GLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKVGFDDAFHYK 696
            +V  K   LK +  G P ++D  +K   +       +  +L++ L+LS DPYMR      ++        G  + G  VA+VV+S +P +  G LV   +GW  +S+    Q   L       +PLS   G +GMPG+TA+ G  EIC  K G+ + V+AA+GAVG +VGQ AK+ GC VVG+AGS EKV+ LK K+GFD AF+YK
Sbjct:    1 MVRAKNWTLKKHFHGHPTDSDFELKTVELP---PLNNGEVLLEALFLSVDPYMRLGSKRLKE--------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK-KIGFDFAFNYK 194          
BLAST of FC921642 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.873e-30
Identity = 83/207 (40.10%), Postives = 122/207 (58.94%), Query Frame = 1
Query:   85 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI---HHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKVGFDDAFHYK 696
            +V  K   LK + +G P ++D  +K   +   ++ G   +L++ L+LS DPYMR      ++        G+ + G  VA+VV+S +  F  G +V   +GW  +  I + +GL K+       +PLS   G +GMPG+TA+ G  E+C  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK ++GFD AF+YK
Sbjct:    1 MVKAKSWTLKKHFQGKPTQSDFELKTVELP-PLKNGE--VLLEALFLSVDPYMRIASKRLKE--------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTH-FISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYK 194          
BLAST of FC921642 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.401e-30
Identity = 86/207 (41.55%), Postives = 118/207 (57.00%), Query Frame = 1
Query:   85 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI---HHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKVGFDDAFHYK 696
            +V  K   LK +  G+P  +D  +K   +   +++G   +L++ LYL+ DPYMR            S   G  + G  VA+VV+S +  F  G +V   +GW  +S I N + L K+       +PLS   G +GMPG+TA+ G  +IC  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD A +YK
Sbjct:    1 MVHAKSWTLKKHFVGYPTNSDFELKTVELP-PLKDGE--VLLEALYLTVDPYMRIMAK--------SLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYK 194          
BLAST of FC921642 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 8.360e-30
Identity = 76/199 (38.19%), Postives = 112/199 (56.28%), Query Frame = 1
Query:   94 NKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP----GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKVGFD 678
            N++ +L +   G P   +  ++   ++     G   +L++ +YLS DPYMR RMS     D  S++P    G  + G  V++VV+S HP+++ GD V G +GW++Y  I +   L K+       S+  G+LGMPG TA+ G  +I  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK       +GFD
Sbjct:    8 NRRWVLASRPHGAPVPENFRLEEDDVATP---GEGQVLLRTVYLSLDPYMRGRMS-----DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFD 197          
The following BLAST results are available for this feature:
BLAST of FC921642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
P2_ARATH1.775e-8067.14Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH1.502e-7966.19Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YFMJ_BACSU1.378e-3241.09Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
YKM8_SCHPO2.350e-3241.18Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_MOUSE6.839e-3242.03Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_RAT1.290e-3040.58Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_RABIT1.290e-3039.81Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_CAVPO2.873e-3040.10Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_BOVIN6.401e-3041.55Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
YNCB_ECOLI8.360e-3038.19Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionC32107F08EF RVDevelopN Citrus clementina cDNA clone C32107F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921642 ID=FC921642; Name=FC921642; organism=Citrus clementina; type=EST; length=716bp
GAAACACACCGCCACTCAGCAACTGAAGGAAGAAACAGAGTGAAACAAGG
AAGAAACAGAGCAACAATGGCGGCTAACAGTGAAGTGGTGAGCAACAAGC
AGGTGATATTAAAGAACTACGTAGAAGGGTTTCCCAAAGAGACAGACATG
TTGGTAAAAGCAAGTTCAATTTCATTGAAAGTAGAGGAAGGCTCAAATGC
AATTCTTGTCAAGAATCTTTACTTGTCTTGCGATCCTTACATGAGAGCTC
GCATGTCCTTTAATCAAGATCCTGATTTCTCTTCTTTCACTCCTGGCTCT
CCCATAGAAGGATTTGGAGTGGCTAAGGTGGTGGATTCAGGACACCCAGA
ATTCAAGAAAGGAGATTTAGTCTGGGGAACAACTGGGTGGGAAGAGTATA
GTCTCATAAAAAATCCTCAGGGCCTCTTTAAAATTCATCACACTGATGTT
CCCCTTTCTTATTATACTGGAATTCTTGGTATGCCTGGGATGACAGCTTG
GGCTGGTTTTTATGAAATTTGTGCTCCAAAGAAAGGCGAATACATCTATG
TTTCTGCAGCATCTGGTGCAGTTGGTCAGCTTGTTGGGCAATTTGCAAAG
TTGATGGGTTGCTATGTTGTTGGAAGTGCTGGCAGTAGAGAAAAGGTTGA
ACTACTCAAGAACAAAGTTGGATTTGATGATGCTTTTCATTATAAAGAGG
AAACGACTTGGATACT
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