FC921643

Overview
NameFC921643
Unique NameFC921643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12033 contig Ccv1_Contig12033:135..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921643 vs. ExPASy Swiss-Prot
Match: PTPM1_MOUSE (Protein-tyrosine phosphatase mitochondrial 1 OS=Mus musculus GN=Ptpmt1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25
Identity = 69/184 (37.50%), Postives = 102/184 (55.43%), Query Frame = 3
Query:  156 AKRALVGAG-ARILFYPTLLYNVFRNKIQ--AEFRWWDEVDQFLLLGAVPFPKDVPRLK-QLGVGGVITLNEPYETLV---PSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVVLAPSQWKAVQEFSQK 686
            A  A + AG AR+LFYPTLLY VFR +++  A   W+  +D  +LLGA+P      RL     V GVIT+NE YET      S  +   G++ L + T D    P+  ++ + V F       G+  YVHCKAGR RS T+V  YL++  + +P  A+E +   R  + + PSQ + ++EF ++
Sbjct:    2 AASAWLEAGLARVLFYPTLLYTVFRGRVRGPAHRDWYHRIDHTVLLGALPLKNMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEVLKEFHKE 185          
BLAST of FC921643 vs. ExPASy Swiss-Prot
Match: PTPM1_RAT (Protein-tyrosine phosphatase mitochondrial 1 OS=Rattus norvegicus GN=Ptpmt1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 70/184 (38.04%), Postives = 101/184 (54.89%), Query Frame = 3
Query:  156 AKRALVGAG-ARILFYPTLLYNVFRNKI--QAEFRWWDEVDQFLLLGAVPFPKDVPRLK-QLGVGGVITLNEPYETLV---PSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVVLAPSQWKAVQEFSQK 686
            A  A + AG AR+LFYPTLLY VFR ++   A   W+  +D  +LLGA+P      RL     V GVIT+NE YET      S  +   G++ L + T D    P+  ++ R V F       G+  YVHCKAGR RS T+V  YL++  + +P  A+E +   R  + + PSQ + ++EF ++
Sbjct:    2 AASAWLEAGLARVLFYPTLLYTVFRGRVGGPAHRDWYHRIDHTVLLGALPLRSMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKNVGVEQLRLSTVDMTGVPTLANLHRGVQFALKYQSLGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEILKEFHKE 185          
BLAST of FC921643 vs. ExPASy Swiss-Prot
Match: PTPM1_HUMAN (Protein-tyrosine phosphatase mitochondrial 1 OS=Homo sapiens GN=PTPMT1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 68/184 (36.96%), Postives = 101/184 (54.89%), Query Frame = 3
Query:  156 AKRALVGAG-ARILFYPTLLYNVFRNKI--QAEFRWWDEVDQFLLLGAVPFPKDVPRLKQ-LGVGGVITLNEPYETLV---PSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVVLAPSQWKAVQEFSQK 686
            A  AL+ AG AR+LFYPTLLY +FR K+  +A   W+  +D  +LLGA+P      +L Q   V GVIT+NE YET      S  +   G++ L + T D    P+  ++++ V F       G+  YVHCKAGR RS T+V  YL++    +P  A+  +   R  + + P Q   ++EF ++
Sbjct:    2 AATALLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGALPLRSLTRQLVQDENVRGVITMNEEYETRFLCNSSQEWKRLGVEQLRLSTVDMTGIPTLDNLQKGVQFALKYQSLGQCVYVHCKAGRSRSATMVAAYLIQVHKWSPEEAVRAIAKIRSYIHIRPGQLDVLKEFHKQ 185          
BLAST of FC921643 vs. ExPASy Swiss-Prot
Match: PTPM1_DROME (Protein-tyrosine phosphatase mitochondrial 1-like protein OS=Drosophila melanogaster GN=Plip PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 66/188 (35.11%), Postives = 101/188 (53.72%), Query Frame = 3
Query:  183 ARILFYPTLLYNVFRNKIQAEFRWWDEVDQFLLLGAVPFPKDVPRL-KQLGVGGVITLNEPYETLVPSS---LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIH------------SNSCAGK---TTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVVLAPSQWKAVQEFSQKN 689
            AR+ FYPTLLYNV   K  A   W+D +D+ ++LGA+PF      L ++  +  V+++NE YE    S+    +   GI+ L + T D   +P+   + R V+FI+            S+S   +   + YVHCKAGR RS T+V CYL+      P  A++++R  RP ++L   QW A++ F   N
Sbjct:    9 ARVSFYPTLLYNVLMEKASAR-NWYDRIDEHVILGALPFRSQANDLIEKENMKAVVSMNEDYELTAFSNNTEKWRKLGIEFLQLATTDIFESPNQEKLFRGVEFINKFLPLKQRIGGLSSSYQPENVGSVYVHCKAGRTRSATLVGCYLMMKNGWTPDQAVDHMRKCRPHILLHTKQWDALRLFYTNN 195          
The following BLAST results are available for this feature:
BLAST of FC921643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PTPM1_MOUSE1.244e-2537.50Protein-tyrosine phosphatase mitochondrial 1 OS=Mu... [more]
PTPM1_RAT3.621e-2538.04Protein-tyrosine phosphatase mitochondrial 1 OS=Ra... [more]
PTPM1_HUMAN1.521e-2336.96Protein-tyrosine phosphatase mitochondrial 1 OS=Ho... [more]
PTPM1_DROME8.347e-2235.11Protein-tyrosine phosphatase mitochondrial 1-like ... [more]
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Properties
Property NameValue
Genbank descriptionC32107F10EF RVDevelopN Citrus clementina cDNA clone C32107F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921643 ID=FC921643; Name=FC921643; organism=Citrus clementina; type=EST; length=712bp
GAGAGTTTTCTCTATTCCGTAAAATTTAGGCTCAGCGGAATCAGAGAAGA
GTCTGAAGGCCCAGTGTTGGTGAGATGAAGATCGAGGAGCTGGACGACGT
GGAGCATGATCGAAACGACGACGGTTGCCGTACGACGCAGATAGTGAAGG
CTGACGCTAAGAGAGCGTTGGTCGGGGCGGGTGCTCGGATCCTCTTCTAC
CCGACCCTTTTGTATAATGTATTTCGTAACAAAATCCAAGCTGAGTTCAG
ATGGTGGGACGAAGTCGATCAGTTTCTTCTACTTGGCGCGGTGCCGTTTC
CTAAGGACGTTCCACGGTTGAAGCAACTTGGGGTCGGTGGAGTCATCACT
CTCAATGAACCCTATGAAACTCTGGTTCCATCTTCCTTGTATCATGCCCA
TGGGATCGACCACTTAGTGATTCCCACAAGAGATTATCTCTTTGCTCCTT
CTTTTGTTGATATTAGGAGAGCTGTGGACTTCATTCATAGTAATTCATGT
GCTGGTAAAACGACTTATGTTCACTGTAAAGCTGGCCGCGGAAGGAGCAC
AACCATTGTGCTATGCTATTTGGTAGAGTACAAGCACATGGCACCGGCTG
CAGCCCTGGAATATGTGAGGTGTAGAAGGCCTCGAGTGGTACTGGCTCCC
TCACAGTGGAAGGCAGTTCAGGAATTCAGCCAGAAAAACTGGCTATACAG
CTCCCTATCTCA
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