FC923092

Overview
NameFC923092
Unique NameFC923092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14383 contig Ccv1_Contig14383:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYE_IPONI (Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.051e-90
Identity = 165/221 (74.66%), Postives = 187/221 (84.62%), Query Frame = 3
Query:    6 GRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 668
            G+CWL+GVTPTE+Q+KDIA WLL+NHGD TGLSTD L++AGYPGA LLG AV GMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE KD+GG+MHPRSSF AFLEVVK+RS PWE SEINAIHSLQ++MRDS Q +  EN  K   + QQN S      ELSS+A E+VRL+ETAT PIFGVDSSG INGWNAK+AELTGL A+ A+GK LID+V HE+S
Sbjct:  435 GKCWLLGVTPTETQVKDIAEWLLHNHGDSTGLSTDCLSDAGYPGAPLLGDAVSGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFIAFLEVVKSRSLPWEDSEINAIHSLQLIMRDSLQGI-GENYMKSVSSPQQNDSDGVRFYELSSMALELVRLVETATVPIFGVDSSGLINGWNAKIAELTGLQANVAIGKYLIDDVTHEDS 654          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHY_PINSY (Phytochrome OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.812e-90
Identity = 157/230 (68.26%), Postives = 194/230 (84.35%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            GG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTDSLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SF+++ +++ +K   +++ N  ++QG+DELSSVA EMVRLIETATAPI  VD +G +NGWNAKVAELTGLP  EAMG SL+ ++V E+S   VE ++
Sbjct:  457 GGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTDSLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRCSFRDI-DDSGTKTMVHSRLNYLRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQDLVFEQSVERVEKML 685          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHY1_SELMA (Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.088e-87
Identity = 158/230 (68.70%), Postives = 191/230 (83.04%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G R WL+G+TP+E+Q+KDIA WLL +H D TGLSTDSLA+AGYPGAA LG  VCGMA A+IT+KDFLFWFRSHTAKEVKWGGAKH P+ KD+G KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DELS+VA EMVRLIETATAPI  VDSSG INGWNAKVA++TGLP +EAMG+SL  E+V  ES   VE L+
Sbjct:  452 GKRFWLLGITPSEAQIKDIAEWLLEHHKDSTGLSTDSLADAGYPGAASLGDEVCGMAAAKITAKDFLFWFRSHTAKEVKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLQGMDELSTVANEMVRLIETATAPILAVDSSGFINGWNAKVADVTGLPVTEAMGRSLAKELVLHESADMVERLL 680          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYB_TOBAC (Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 5.397e-87
Identity = 160/229 (69.87%), Postives = 187/229 (81.66%), Query Frame = 3
Query:    6 GRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAALLG AVCGMA A ITSKDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSL +++RDSF++ E  N SK   + Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVAELT L   EAMGKSL+ ++VH+ES    E L+
Sbjct:  461 GKYYPLGVTPTEAQIKDIVEWLLTYHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSL-LILRDSFKDAEASN-SKAVVHAQLGEMELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTDLSVEEAMGKSLVHDLVHKESQETAEKLL 687          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYB_SOLTU (Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 2.679e-86
Identity = 157/229 (68.56%), Postives = 186/229 (81.22%), Query Frame = 3
Query:    6 GRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSL +AGYPGAA LG AVCGMA A ITSKDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ E  N SK   +      ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVAELTG+   EAMGKSL+ ++V++ES    E L+
Sbjct:  458 GKYYPLGVTPTEAQIKDIVEWLLAYHGDSTGLSTDSLPDAGYPGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEASN-SKAIVHAHLGEMELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTGVSVEEAMGKSLVHDLVYKESQETAEKLL 685          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHY2_CERPU (Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.498e-86
Identity = 156/230 (67.83%), Postives = 187/230 (81.30%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G R WL+G TPTE+Q+KDIA WLL  H D TGLSTDSLA+A YPGA LLG AVCGMA A+IT+KDFLFWFRSHTAKEVKWGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+ G+DELS VA EMVRLIETATAPI  VDS+G INGWNAK+A +TGLP SEAMG+SL+ ++V +ES   VE L+
Sbjct:  444 GKRFWLLGTTPTENQIKDIAEWLLEYHKDSTGLSTDSLADANYPGAHLLGDAVCGMAAAKITAKDFLFWFRSHTAKEVKWGGAKHDPAEKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLHGMDELSVVANEMVRLIETATAPILAVDSTGMINGWNAKIAHVTGLPVSEAMGRSLVKDLVLDESVVVVERLL 672          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYB1_SOLLC (Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 2.962e-85
Identity = 154/224 (68.75%), Postives = 184/224 (82.14%), Query Frame = 3
Query:   21 VGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A ITSKDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ E  N   +     +   ++QG+DELSSVA EMVRLIETATAPIFGVD +G INGWN KV ELTGL A EA GKSL+ +++++ES  + E L+
Sbjct:  465 LGVTPTEAQIKDIVEWLLAYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEASNSKAIVHALGE--MELQGIDELSSVAREMVRLIETATAPIFGVDVNGRINGWNEKVVELTGLSAEEAKGKSLVHDLLYKESQESAEKLL 686          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYB_ARATH (Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.625e-83
Identity = 149/232 (64.22%), Postives = 182/232 (78.45%), Query Frame = 3
Query:    6 GRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G+ + +GV P+E Q+KD+  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ +++++E+   V  L+
Sbjct:  485 GKYYPLGVAPSEVQIKDVVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLL 716          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHY_ADICA (Phytochrome 1 OS=Adiantum capillus-veneris GN=PHY1 PE=2 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 2.772e-83
Identity = 149/230 (64.78%), Postives = 183/230 (79.57%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G +CWL+G TPTE+Q+ DIA WLL+ H D TGLSTDSLA+ GYP A+ LG AVCG+A A+IT+ DFLFWFRSHTAKEV+WGGA+H PE +D+G +MHPRSSFKAFLEVVK +S PWE  E++AIHSLQ+++R SFQ++++ N +K   + + N  K+QG+DELS+VA EMVRLIETATAPI  VD  G INGWN KVAELTGL    AMGKSL  E+VHEES   VE ++
Sbjct:  442 GKKCWLLGTTPTEAQIVDIAAWLLDCHKDSTGLSTDSLAKTGYPEASCLGDAVCGLAAAKITATDFLFWFRSHTAKEVRWGGARHDPEERDDGRRMHPRSSFKAFLEVVKQQSLPWEDVEMDAIHSLQLILRGSFQDIDDSN-TKTMIHARLNDLKLQGLDELSTVASEMVRLIETATAPILAVDGQGLINGWNGKVAELTGLSFETAMGKSLAKELVHEESKTIVERVL 670          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYB_SORBI (Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 2.772e-83
Identity = 151/232 (65.09%), Postives = 184/232 (79.31%), Query Frame = 3
Query:    6 GRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK---VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA LG AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++  E   +    V G  Q    +++G++ELSSVA EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES   VE L+
Sbjct:  501 GKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAAALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELRGINELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIVEKLL 732          
The following BLAST results are available for this feature:
BLAST of FC923092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PHYE_IPONI1.051e-9074.66Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1[more]
PHY_PINSY6.812e-9068.26Phytochrome OS=Pinus sylvestris PE=2 SV=1[more]
PHY1_SELMA1.088e-8768.70Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=... [more]
PHYB_TOBAC5.397e-8769.87Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV... [more]
PHYB_SOLTU2.679e-8668.56Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV... [more]
PHY2_CERPU3.498e-8667.83Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 ... [more]
PHYB1_SOLLC2.962e-8568.75Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE... [more]
PHYB_ARATH1.625e-8364.22Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1... [more]
PHY_ADICA2.772e-8364.78Phytochrome 1 OS=Adiantum capillus-veneris GN=PHY1... [more]
PHYB_SORBI2.772e-8365.09Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31701A04EF StrClemenN Citrus clementina cDNA clone C31701A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923092 ID=FC923092; Name=FC923092; organism=Citrus clementina; type=EST; length=694bp
ATGGTGGGAGATGCTGGCTGGTGGGGGTAACTCCAACTGAATCACAGTTA
AAAGATATTGCATGGTGGCTTCTCAATAATCATGGGGATTGTACAGGGTT
GAGTACTGATAGTTTGGCAGAGGCTGGTTACCCCGGTGCTGCTTTATTGG
GTCAGGCGGTTTGTGGTATGGCTACTGCCAGAATCACTTCAAAGGATTTC
TTATTCTGGTTCAGATCTCACACAGCAAAAGAAGTTAAATGGGGAGGAGC
TAAGCATCACCCAGAGCATAAGGATAACGGTGGCAAAATGCATCCAAGAT
CATCGTTTAAAGCTTTCCTTGAAGTGGTGAAAAATAGGAGTTTTCCTTGG
GAAGTTTCGGAAATCAATGCTATTCACTCTTTGCAAATTGTAATGAGAGA
TTCATTTCAGGAGATGGAGGAAGAAAATGACTCCAAGGTTCAAGGTAATA
CCCAGCAGAATGGCAGTAAGATGCAGGGTGTGGATGAGCTCAGTTCAGTG
GCATGTGAAATGGTTAGATTGATTGAGACAGCGACAGCTCCAATTTTTGG
AGTTGATTCATCTGGTACCATCAATGGGTGGAATGCAAAAGTTGCCGAAT
TGACAGGATTACCAGCTAGTGAAGCCATGGGGAAATCTCTAATTGATGAA
GTAGTTCATGAGGAATCTCANGGAGCTGTTGAAAATCTTATCTG
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