FC923096

Overview
NameFC923096
Unique NameFC923096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15267 contig Ccv1_Contig15267:3..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923096 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.303e-43
Identity = 85/192 (44.27%), Postives = 130/192 (67.71%), Query Frame = 2
Query:  140 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKRKK 715
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of FC923096 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.303e-43
Identity = 85/192 (44.27%), Postives = 130/192 (67.71%), Query Frame = 2
Query:  140 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKRKK 715
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of FC923096 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.303e-43
Identity = 86/191 (45.03%), Postives = 129/191 (67.54%), Query Frame = 2
Query:  143 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKRKK 715
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  I+++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of FC923096 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 1.650e-41
Identity = 83/191 (43.46%), Postives = 126/191 (65.97%), Query Frame = 2
Query:  143 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKRKK 715
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W   NE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ +    + ++  K
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFSQEENTENMK 223          
BLAST of FC923096 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.494e-39
Identity = 85/203 (41.87%), Postives = 128/203 (63.05%), Query Frame = 2
Query:  122 SPAIIKSKMEGK-----GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKRKK 715
            SP   KS  E +     G L   ++ LL TEKQ R + D   T K   EI++LC+EA     +NE++V LSK+RGQL+            Y+DQ  D+  ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+G M K EKI F ++Q+R+C++ +D++RAQ++  K++ +    D ++  K
Sbjct:   22 SPIADKSCKENRELAKSGKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLK 224          
BLAST of FC923096 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.685e-33
Identity = 77/180 (42.78%), Postives = 115/180 (63.89%), Query Frame = 2
Query:  155 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVF 688
            + +  + +DQLL  EK+ R + D+A +K+ + +I+ L      W  LNEQ+  LSKK GQLK            Y+  +   DL+TRI +I+T+  V+  KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + DY +A +LSRKI  + F
Sbjct:   29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208          
BLAST of FC923096 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.812e-33
Identity = 77/179 (43.02%), Postives = 114/179 (63.69%), Query Frame = 2
Query:  161 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDAD 697
            +++A +++LL  EKQ+R + D +   K +  I  L F A D++ LNEQ+V+L KK GQLK            Y+    DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I  A +++    VET+G+    EK+AFIL+QVRL L R DY  A   ++KI+ + F+ +
Sbjct:   27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKE 205          
The following BLAST results are available for this feature:
BLAST of FC923096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_PONAB2.303e-4344.2726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN2.303e-4344.2726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN2.303e-4345.0326S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE1.650e-4143.4626S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI4.494e-3941.8726S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_YEAST3.685e-3342.7826S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
RPN5_SCHPO4.812e-3343.0226S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31701A09EF StrClemenN Citrus clementina cDNA clone C31701A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923096 ID=FC923096; Name=FC923096; organism=Citrus clementina; type=EST; length=721bp
GGTTCAAAGGGTTTATTCCGTTTCCTTTCTTTTCAATTCTTCACCGAATC
AGAATCCCTCTCTGAACTCACTCTCTGAAAATTAGGGTTTTTTCCCCCTT
ATTTAACAATTTTGGGCATAATCTCCGGCGATTATCAAATCGAAGATGGA
GGGTAAAGGCAATTTGGAGGCGCAAGTAGATCAGCTTTTGAATACCGAGA
AGCAGATGAGATTATCCGGTGACGTGGCCGGCACCAAGAAGGCGGTGACG
GAAATTTTGCAGCTTTGCTTTGAAGCTAAAGACTGGAAGACTCTCAATGA
ACAGATTGTTAATCTTTCCAAGAAACGCGGTCAACTCAAGCAGGCTGTAA
CTGCAATGGTCCAGCAAGCAATGCAGTACATCGATCAGACGCCAGATCTT
GATACTCGTATAGAGCTCATCAAAACACTAAATAGTGTCTCTGCAGGGAA
GATATATGTTGAAATTGAGAGGGCAAGGTTGATTAAAAAACTTGCAAAGA
TTAAGGAAGAACAAGGGCTTATAGCGGAAGCTGCAGATCTGATGCAAGAA
GTGGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATCGCCTT
CATTCTTGAACAAGTCCGTCTGTGCCTAGACCGCCAAGATTATGTCCGTG
CACAAATTCTTTCAAGGAAGATTAGTCCAAGAGTTTTTGATGCTGATCCT
TCGAAAAGAAAGAAAAAGCCA
back to top