FC923098

Overview
NameFC923098
Unique NameFC923098
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW23_ARATH (tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana GN=At4g04670 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.755e-59
Identity = 107/151 (70.86%), Postives = 127/151 (84.11%), Query Frame = 1
Query:  259 FAGVYFV*SC*STRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVADVGCR 711
            FAG+ +       RAKA+LVYACEWNP A+EAL+ N++ANSVS+ CI+LEGDNR TAPKGVA+RV LGLIP+SE SWVTA+QALR EGG LHVHGNVKDS+E  W EHV+K++ +IAR+EG  WEVT+EHIE+VKWYAP IRHLVADV CR
Sbjct:  845 FAGIGYFVLPFLVRAKAKLVYACEWNPHAIEALRRNVEANSVSERCIILEGDNRITAPKGVADRVNLGLIPSSEGSWVTAIQALRPEGGILHVHGNVKDSDESSWGEHVTKTLSDIARAEGRSWEVTVEHIEKVKWYAPRIRHLVADVRCR 995          
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW23_ORYSJ (tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza sativa subsp. japonica GN=Os07g0515000 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.102e-53
Identity = 96/151 (63.58%), Postives = 119/151 (78.81%), Query Frame = 1
Query:  259 FAGVYFV*SC*STRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVADVGCR 711
            FAG+ +       +A A+LVYACEWNP A+EAL+ N+  N V+D CI+LEGDNR TAPKG+A+RVCLGL+P+SE SW TAV+ALR+EGG LH+HGNV DS+E LW ++V KSI  IA++ G  W VT+EH+ERVKWY PHIRHLV DV CR
Sbjct:  891 FAGIGYFVLPFLVKANAKLVYACEWNPHALEALQRNVMDNHVADRCIILEGDNRLTAPKGIADRVCLGLLPSSECSWDTAVRALRAEGGMLHIHGNVNDSDESLWLDNVVKSITNIAKTHGLSWNVTVEHVERVKWYGPHIRHLVVDVKCR 1041          
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_DANRE (tRNA wybutosine-synthesizing protein 2 homolog OS=Danio rerio GN=trmt12 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 72/185 (38.92%), Postives = 92/185 (49.73%), Query Frame = 1
Query:  256 YFAGVYFV*SC*STRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQAL-RSEGGTLHVHGNV----------------------------KDSEE-KLWAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGCRQI 717
            YF   Y V       A A  V+ACEWNP AV AL+ NL+ N VS+ C V +GDNR  +   +A+RV LGLIP+SE  W  A + L RS GG +H+H NV                            KD +    WA   +K I  +     G  W+  I HIE VK YAPHI H+V D+ C+ +
Sbjct:  230 YFTLPYLV------HANAAHVHACEWNPDAVAALQRNLEINGVSNRCTVHQGDNRQLSLSDLADRVNLGLIPSSEEGWPVACRLLKRSTGGIMHIHQNVTAPFHHEPSELNSSVEGSSVEVSPLRIQKDMQVWTAWASETAKRICTLLLGITGSEWKTNIRHIEHVKTYAPHISHVVLDLECKPL 408          
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_HUMAN (tRNA wybutosine-synthesizing protein 2 homolog OS=Homo sapiens GN=TRMT12 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 67/186 (36.02%), Postives = 87/186 (46.77%), Query Frame = 1
Query:  301 AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSE-GGTLHVHGNV-------------------------------------KDSEEKL-----------WAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGC 708
            A A  V+ACEWNP AV AL++NL+ N V+D C +  GDNR      +A+RV LGLIP+SE  W  A Q LR + GG LH+H NV                                     +DS  K+           WAE     I  + +   G  W+  I HI+ VK YAPH+ H+V D+ C
Sbjct:  256 AGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQALGVSKVEKEHWLYPQQITTNQWKNGATRDSRGKMLSPATKPEWQRWAESAETRIATLLQQVHGKPWKTQILHIQPVKSYAPHVDHIVLDLEC 441          
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_BOVIN (tRNA wybutosine-synthesizing protein 2 homolog OS=Bos taurus GN=TRMT12 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 67/186 (36.02%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  301 AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSE-GGTLHVHGNVK------------------------------------DSEEKL-----------WAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGCR 711
            A+A  V+ACEWNP AV AL++NL+ N V+D C +  GDNR      VA+RV LGLIP+SE  W  A + L+ + GG LH+H NV+                                    DS  K            WA+     I  +     G RW+  I HI+ VK YAPH+ H+V D+ CR
Sbjct:  247 AEAAFVHACEWNPHAVVALRNNLELNGVADRCQIHFGDNRKLKLSNVADRVNLGLIPSSEEGWPIACRVLKQDAGGILHIHQNVESFPGKTLQPPGSSEMEEHWPSPHQIISNQLNNGATSDSRRKTLSVATKPEWQRWAKAAETRIATLLHQVHGKRWKTQILHIQPVKSYAPHVDHIVLDLECR 432          
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_MACFA (tRNA wybutosine-synthesizing protein 2 homolog OS=Macaca fascicularis GN=TRMT12 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 66/186 (35.48%), Postives = 87/186 (46.77%), Query Frame = 1
Query:  301 AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSE-GGTLHVHGNV-------------------------------------KDSEEKL-----------WAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGC 708
            A A  V+ACEWNP AV AL++NL+ N V+D C +  GDNR      +A+RV LGLIP+SE  W  A Q LR + GG LH+H NV                                     +D+  K+           WAE     I  + +   G  W+  I HI+ VK YAPH+ H+V D+ C
Sbjct:  256 AGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQPLEVSKTEKEHWLYPQQITTNQWKNGATRDTRGKMLSPATKPEWQRWAESAETRIATLLQQVHGKPWKTQILHIQPVKSYAPHVDHIVLDLEC 441          
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_MOUSE (tRNA wybutosine-synthesizing protein 2 homolog OS=Mus musculus GN=Trmt12 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.452e-21
Identity = 64/188 (34.04%), Postives = 83/188 (44.15%), Query Frame = 1
Query:  301 AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSE-GGTLHVHGNVKDSEEKL-----------------------------------------------WAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGCRQI 717
            A A  V+ACEWNP AV AL++NL+ N V+D C +  GDNR      +A+RV LGLIP+S+  W  A Q LR + GG LH+H NV+    K                                                WAE     I  +     G  W   I H+  VK YAPH+ H+V D+ CR +
Sbjct:  246 AGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLSDIADRVNLGLIPSSKEGWPVACQVLRKDVGGILHIHQNVESFSGKTPQPPGSNNVEKEHWPRPQKITTDTQGNGTTENFRGEISSANKPEWWRWAESAETQIASLLHQVHGKPWRTRILHVHPVKSYAPHVDHIVLDLECRPL 433          
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_RAT (tRNA wybutosine-synthesizing protein 2 homolog OS=Rattus norvegicus GN=Trmt12 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 65/186 (34.95%), Postives = 81/186 (43.55%), Query Frame = 1
Query:  301 AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSE-GGTLHVHGNVKD-----------------------------------------------SEEKLWAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGCR 711
            A A  V+ACEWNP AV AL+ NL+ N V+D C +  GDNR       A+RV LGLIP+SE  W  A Q LR + GG LH+H NV+                                                 E + WAE     I  +     G  W   I H+  VK YAPH+ H+V D+ CR
Sbjct:  246 AGAAFVHACEWNPHAVVALRKNLEINGVADRCQIHFGDNRKLKLSNTADRVNLGLIPSSEEGWPIACQVLRKDVGGILHIHQNVESFSGKNPQPPGSSNMEKKHWPHPQKITTDKQGNRTTGSCMGEMSSASKPEWQRWAESAESQIASLLHQVHGKPWRTRILHVHPVKSYAPHVDHIVLDLECR 431          
The following BLAST results are available for this feature:
BLAST of FC923098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TYW23_ARATH1.755e-5970.86tRNA wybutosine-synthesizing protein 2/3/4 OS=Arab... [more]
TYW23_ORYSJ1.102e-5363.58tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryz... [more]
TYW2_DANRE6.300e-2538.92tRNA wybutosine-synthesizing protein 2 homolog OS=... [more]
TYW2_HUMAN2.241e-2236.02tRNA wybutosine-synthesizing protein 2 homolog OS=... [more]
TYW2_BOVIN2.241e-2236.02tRNA wybutosine-synthesizing protein 2 homolog OS=... [more]
TYW2_MACFA4.992e-2235.48tRNA wybutosine-synthesizing protein 2 homolog OS=... [more]
TYW2_MOUSE1.452e-2134.04tRNA wybutosine-synthesizing protein 2 homolog OS=... [more]
TYW2_RAT1.897e-2134.95tRNA wybutosine-synthesizing protein 2 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionC31701A11EF StrClemenN Citrus clementina cDNA clone C31701A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923098 ID=FC923098; Name=FC923098; organism=Citrus clementina; type=EST; length=722bp
ACGACCAGACATCTCTCATGTGTTGAATCTAAGGTGATGGAAGTTGGGAG
GTTATTGCTTACAAAAAAGAGTTTTCTTATTTGTCTCCAGCAATGTACAA
TTTAATTGTGATTAGGGACAGGCTAAGCAATGTTGTTTTCTTTTATGGTT
CCCGTAGATACATATTTTTCTGAAACTTTATGATCCAGGAGCTTTAATTA
ATACGGGTATCTACATTGTGCATCTTACTATTTTTTAACTGGTTGATCAT
TCTTATATTTTGCTGGTGTTTATTTTGTATGATCATGTTGATCAACCAGG
GCGAAAGCAAGGCTAGTTTATGCTTGTGAATGGAATCCGTGTGCTGTTGA
GGCACTTAAACATAATCTTCAGGCCAATTCTGTTTCTGATCACTGTATTG
TACTTGAAGGGGATAACCGGTTTACAGCCCCAAAAGGAGTTGCCAATCGG
GTCTGTCTTGGTCTTATTCCAACAAGTGAGAATAGCTGGGTTACTGCTGT
ACAGGCATTAAGGAGTGAGGGGGGAACATTACATGTGCATGGGAATGTGA
AGGATTCTGAGGAGAAGTTGTGGGCTGAACATGTATCAAAATCAATATAT
GAAATTGCTAGATCTGAAGGTCATAGATGGGAAGTTACTATTGAACATAT
TGAAAGAGTTAAATGGTATGCACCCCATATTCGCCATCTTGTTGCAGATG
TTGGATGCAGACAGATCCAACA
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