FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.816e-34
Identity = 68/146 (46.58%), Postives = 103/146 (70.55%), Query Frame = 2
Query:  200 PGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            PGK+FIGGL+ +TSP     +FG+YG+I+++++MKD  T + RGFGFVT++DP+ VDKV+ + TH ++GK+V+ K   P+ A      +TKKIFVGG+ +    ++ K +F QFG +++  +M D  T+R RGFGF+TF +E  VD
Sbjct:   28 PGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVD 173          

HSP 2 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436
            KIF+GGL+  T+      +F ++G I D+++M D++T + RGFGFVT+    VVDKV E   H IN K VE K+  PK
Sbjct:  119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPK 196          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33
Identity = 69/143 (48.25%), Postives = 98/143 (68.53%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            K+FIGGL  +T+     ++FGKYG +TD  IMKD  TG+ RGFGF+++  PS VD+V++  HI++GK ++ KR IP+     +  KT KIFVGGI   V   EF++FF Q+G + + Q+M D  T +SRGFGF+T+D+  AVD
Sbjct:  160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 298          

HSP 2 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPK 436
            GKIF+GG+  +  P +F + F ++G I D+ +M D+ TGQ RGFGFVTY     VD+V ++  I    +++EIKR  P+
Sbjct:  243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31
Identity = 64/158 (40.51%), Postives = 100/158 (63.29%), Query Frame = 2
Query:  161 DDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            +D ++  +      GK+FIGGL  ET+      +F ++GE+ D  +M+D  TG+ RGFGF+T+ +P  V++V+   H ++GK ++ KR IP+     +  KT K+FVGG+P    E+EF++FF QFG V +  +M D  T R RGFGF+T++ E AV+
Sbjct:  149 EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR----EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302          

HSP 2 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  140 SSDHHPEDDRSQPHTG----DGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPKGAV 445
            S +HH +     P       +     K+F+GG+  + +  +F   F ++G + D+ +M D+ TG+PRGFGFVTY + S V+  +   +I I+GK VE+KR  PK ++
Sbjct:  222 SKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASL 328          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31
Identity = 65/146 (44.52%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  200 PGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            PGK+FIGGL+ +TSP     +F K+GEI + ++M+D  T + RGFGFVT+ADP+ VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+ ++   ++ K +F QFG+V++  +M D +T+R RGFGF+TF+ E  V+
Sbjct:   20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165          

HSP 2 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436
            KIF+GGL+  T      ++F ++G++ D+++M D+ T + RGFGFVT+ +  VV+KV E   H IN K VE K+  PK
Sbjct:  111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 188          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31
Identity = 65/146 (44.52%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  200 PGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            PGK+FIGGL+ +TSP     +F K+GEI + ++M+D  T + RGFGFVT+ADP+ VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+ ++   ++ K +F QFG+V++  +M D +T+R RGFGF+TF+ E  V+
Sbjct:   20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165          

HSP 2 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436
            KIF+GGL+  T      ++F ++G++ D+++M D+ T + RGFGFVT+ +  VV+KV E   H IN K VE K+  PK
Sbjct:  111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 188          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28
Identity = 58/145 (40.00%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            GK+F+GGL+ ET+     ++F ++G+I D V+MK+ ++G+ RGFGFVT+ADP+ V+ V+++  H ++G+ ++ K   P+     K     K+F+GG+PS+V E + + FF ++G+V E  IM D    +SRGFGF++F+ E +V+
Sbjct:    7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151          

HSP 2 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  173 QPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPKGAVGSKD 457
            +P  G G    K+F+GGL    +       F +YG++T+ VIM D++  + RGFGF+++ + S V+ V  + +I +NGKQVEIK+  P+   G ++
Sbjct:   89 KPKKGGGY---KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQN 181          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.086e-28
Identity = 64/163 (39.26%), Postives = 102/163 (62.58%), Query Frame = 2
Query:  158 EDDRSQPHTGDGASPG---KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            E D  QP      SP    K+FIGGL+ +T+     ++FG++GE+ + ++M+D  T + RGFGFVT+ D + VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V+
Sbjct:    2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164          

HSP 2 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436
            KIF+GGL+  T+     ++F ++G++ D+++M D+ T + RGFGFVT+    +V+KV E   H IN K VE K+  PK
Sbjct:  110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 64/163 (39.26%), Postives = 102/163 (62.58%), Query Frame = 2
Query:  158 EDDRSQPHTGDGASPG---KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            E D  QP      SP    K+FIGGL+ +T+     ++FG++GE+ + ++M+D  T + RGFGFVT+ D + VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V+
Sbjct:    2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 64/163 (39.26%), Postives = 102/163 (62.58%), Query Frame = 2
Query:  158 EDDRSQPHTGDGASPG---KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            E D  QP      SP    K+FIGGL+ +T+     ++FG++GE+ + ++M+D  T + RGFGFVT+ D + VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V+
Sbjct:    2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG--------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            GK+F+GGL   T+      +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V  V+    H ++G+ ++ K   P+G                 S + K+ KIFVGGIP +  E E +++F +FG V E  ++ D    R RGFGFITF+ EQ+VD
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168          

HSP 2 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  158 EDDRSQPHTG-------DGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436
            + +R++P  G       D +   KIF+GG+       +  ++F K+G +T+ V++ D +  +PRGFGF+T+ D   VD+ +    H I GK+VE+KR  P+
Sbjct:   91 QPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
MSIR6_DROME3.816e-3446.58RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
HRP1_YEAST9.399e-3348.25Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]
YHKF_SCHPO1.773e-3140.51Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
MSI2H_MOUSE1.773e-3144.52RNA-binding protein Musashi homolog 2 OS=Mus muscu... [more]
MSI2H_HUMAN1.773e-3144.52RNA-binding protein Musashi homolog 2 OS=Homo sapi... [more]
RB27C_DROME4.086e-2840.00Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
MSI1H_HUMAN4.086e-2839.26RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
MSI1H_RAT5.337e-2839.26RNA-binding protein Musashi homolog 1 OS=Rattus no... [more]
MSI1H_MOUSE5.337e-2839.26RNA-binding protein Musashi homolog 1 OS=Mus muscu... [more]
DAZP1_HUMAN1.553e-2740.88DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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