FC923100

Overview
NameFC923100
Unique NameFC923100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923100 vs. ExPASy Swiss-Prot
Match: YC47_SCHPO (Uncharacterized WD repeat-containing protein C1672.07 OS=Schizosaccharomyces pombe GN=SPCC1672.07 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 75/217 (34.56%), Postives = 107/217 (49.31%), Query Frame = 1
Query:    1 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSSGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTENLKVENKTKPDIPVSQFIQLLHSCADMKNFQHL 651
            ++ +DG++R WD+     ID+I      T+L+ +P  D LAT HVDQ G+ LW N  MF   S         ++V V  PSVS  +G     ++  +V       +D S   T  Q  P+L TLS LP++QWQ+LINL+ IKARN           APFFLPS+   S   + K   +T+          K    +  ++F  LLH   D   F++L
Sbjct:  589 TASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLSMFKHVST--KALRLDDVVEVSAPSVSGEKGISVVEAAL-NVESNAEDEEDIS-YRTMDQLDPNLQTLSKLPRTQWQTLINLEAIKARNAPKEVPKVPEKAPFFLPSLKDQSEATVPKQPIATEISKPTAVASIK----VSGTEFSTLLHGNDDDAFFEYL 797          
BLAST of FC923100 vs. ExPASy Swiss-Prot
Match: WDR36_HUMAN (WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.746e-20
Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 1
Query:    1 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGC---QDENSSQPDVHRTDRVPKDSSGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSL 501
            S+ MD S+R WD+     ID   +D +   +S+SP  D LAT+HVD  G+YLW N  ++S         S + + +  +PS+  + G    QD   S+  V  +D + +  S     +Q    LVTLSLLP+S+W++L+NLD+IK +N           APFF+P++P L
Sbjct:  639 SAAMDCSIRTWDLPSGCLIDCFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPADYVPSIVMLPGTCQTQDVEVSEETVEPSDELIEYDSP----EQLNEQLVTLSLLPESRWKNLLNLDVIKKKNKPKEPPKVPKSAPFFIPTIPGL 797          
BLAST of FC923100 vs. ExPASy Swiss-Prot
Match: UTP21_YEAST (U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae GN=UTP21 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 57/178 (32.02%), Postives = 85/178 (47.75%), Query Frame = 1
Query:    1 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS--NIDSYASGKEIVSVKMPSV------SSVEGCQDENSSQPDVHRTDRVPKDSSGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGE 510
            S+ +D ++R WD+     ID I VD   T +  SPN D+LAT HV  NG+ +W NR  F   S   ID      E   + +PS       S + G  + N  +      D    D +   + +Q   +L+TLS+ P+S+  +L++LD+I+ R+            PFFL     LSGE
Sbjct:  602 SASLDSTIRTWDLPTGGCIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNRAQFKTVSTRTIDE----SEFARMALPSTSVRGNDSMLSGALESNGGE------DLNDIDFNTYTSLEQIDKELLTLSIGPRSKMNTLLHLDVIRKRSKPKEAPKKSEKLPFFL----QLSGE 765          
The following BLAST results are available for this feature:
BLAST of FC923100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YC47_SCHPO3.883e-2234.56Uncharacterized WD repeat-containing protein C1672... [more]
WDR36_HUMAN4.746e-2035.88WD repeat-containing protein 36 OS=Homo sapiens GN... [more]
UTP21_YEAST3.892e-1432.02U3 small nucleolar RNA-associated protein 21 OS=Sa... [more]
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Properties
Property NameValue
Genbank descriptionC31701B01EF StrClemenN Citrus clementina cDNA clone C31701B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923100 ID=FC923100; Name=FC923100; organism=Citrus clementina; type=EST; length=727bp
TCATCTGGCATGGATGGGAGCCTCAGAATTTGGGATGTTATCTTGGCAAG
ACAAATTGACGCAATACATGTTGATGTGTCTATCACAGCATTGTCTCTCT
CACCAAATATGGATGTTTTAGCAACTGCCCATGTTGATCAGAATGGGGTT
TATCTATGGGTTAATCGTTGTATGTTCTCTGGAGATTCAAATATTGATTC
TTACGCAAGTGGAAAGGAAATAGTGAGCGTCAAAATGCCATCCGTTTCGT
CAGTTGAAGGTTGCCAAGACGAGAATTCTAGCCAGCCTGATGTTCACCGT
ACAGACAGAGTACCCAAGGACAGTTCTGGTTTACCAACTTTCAAGCAGCA
GATCCCAGATTTAGTTACTCTGTCATTATTGCCTAAAAGCCAGTGGCAAA
GCTTGATCAATCTGGATATTATTAAGGCCCGCAATAAACCAATTGAGCCT
CCTAAGAAACCAGAGAAGGCTCCTTTCTTCTTGCCTTCAGTTCCATCCCT
TTCAGGAGAAATATTGTTTAAGCCTAGTGAGTCCACTAAGGAGGATACAG
AAAACCTTAAGGTGGAAAACAAGACAAAACCTGACATCCCAGTGTCCCAA
TTTATACAACTTCTTCATTCCTGTGCAGATATGAAAAATTTTCAGCATTT
ACTGATTATATTAAAAGTCTGTCCCCATCTACTTTGGATANTGAAACTCG
AATGCTTCAGATCATTGATCATGATGA
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