FC923105

Overview
NameFC923105
Unique NameFC923105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_CYAP4 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhN PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 3
Query:  252 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQP-------IARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQEI 668
            +++ D+EK  A+ IY P E                    +SA GLGD  + LT+V+ V P H+GK         +  ++ PP V+Y L  LPP A+GLV+W+I+ K LS+ EL +L++LP   PKV+++ E G  R+F W+P +E+
Sbjct:    9 QFIQDLEKSGALGIYVPSEGGFEGRYQRRLRAAGYSTLHISAPGLGDLPSYLTQVHGVRPPHLGKSTQGNTDWGVKTFFLPPLVNYHLENLPPKARGLVLWMIDGKRLSRQELAYLSILPAQEPKVKIVIELGGDRQFRWQPLKEM 154          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_TRIEI (NAD(P)H-quinone oxidoreductase subunit N OS=Trichodesmium erythraeum (strain IMS101) GN=ndhN PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.542e-22
Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  258 LSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQ 662
            + D+EK  ++A+Y P E                    ++ARGLGD    LT V+ V P H+GK+ +         +Y PP V+Y+L  LPP AKGLV+WI+E ++LS  E+++L +LP   P+V+VI E G  R F W P Q
Sbjct:   11 IRDLEKSGSLAVYPPLEGGFEGRYQRRLRASGYVSESITARGLGDLAMYLTGVHGVRPPHLGKKTVGNGPAVGYVYYVPPIVNYKLEHLPPKAKGLVLWIMEGQILSSQEIEYLTVLPKSEPRVKVIVEMGGDRFFRWTPLQ 152          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_CYAP8 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 8801) GN=ndhN PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.320e-22
Identity = 55/141 (39.01%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  267 VEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQEI 668
            +EK  ++A+Y P E                    L+ARGLGD    L  V+ V P H+GK+ I +       ++ PP   Y+L  LPP +KGLV+WI+E  +LS++EL++LA LPTL P+++V+ E G  R F WKP  E+
Sbjct:   14 LEKSGSLAVYAPLEGGFEGRYQRRLRTNGYHTFSLTARGLGDVSAYLMGVHGVRPPHLGKKNIGQEAAVGPVYFVPPIAAYQLETLPPKSKGLVLWILEGFILSQTELEYLANLPTLEPRLKVVIELGGERYFSWKPLPEV 154          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_CYAP7 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7424) GN=ndhN PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21
Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  267 VEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQE 665
            +EK  A+ +Y P E                   +L+ARGLGD  + LT ++ V P H+GK+ I +       ++ PP   Y+L  LPP +KGLV+WIIE  +LS++E+++L  LP   P+++++ E G  R F W+P ++
Sbjct:   14 LEKSGALGVYVPLEGGFEGRYQRRLRANGYTPYNLTARGLGDLSSYLTGIHGVRPPHLGKKNIGQDAAVGPVYFVPPIATYQLETLPPKSKGLVLWIIEGMILSRAEIEYLTYLPQQEPRLKIVVEMGGERYFRWQPLEQ 153          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_ANASP (NAD(P)H-quinone oxidoreductase subunit N OS=Anabaena sp. (strain PCC 7120) GN=ndhN PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.059e-20
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  258 LSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQE 665
            + D+EK  ++ +Y P E                     +ARGLGD    LT V+ V P H+GK+           +Y PP V  +L  LPP +KGLV+WIIE  +LS  E++FL  LP+L P+V+V+ E G  R F WK  ++
Sbjct:   11 IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRPPHLGKKSSGNGAAVGNVYYLPPIVGSQLEHLPPKSKGLVLWIIEGHILSDQEVEFLTSLPSLEPRVKVVVERGGDRTFRWKALKD 153          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_NOSP7 (NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhN PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  258 LSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMW 650
            + D+EK  A+ +Y P E                    ++A+GLGD    LT+++ V P H+GK+           +Y PP +D  L  LPP +KGLV+WIIE  +LS  EL++L  LP L P+V+V+ E G  R F W
Sbjct:   11 IRDLEKFGALGVYVPLEGGYEGRYQRRLRAAGYTTLHITAKGLGDVAAYLTRIHGVRPPHLGKKSTGSGAAVGQVYYLPPILDSHLEQLPPKSKGLVLWIIEGHILSNEELEYLTNLPQLEPRVKVVIERGGDRAFRW 148          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_CYAA5 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain ATCC 51142) GN=ndhN PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 50/141 (35.46%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  267 VEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQEI 668
            +EK  A+ +Y P E                    L+ARGLGD    L  V+ V P H+GK+ I +       ++ PP   Y+L +L P +KGLV+WI+E  +LSK+EL++L  LP   P+++V+ E G  R F W+P + +
Sbjct:   14 LEKSGALGVYAPLEGGFEGRYQRRLRTNGYDSLSLTARGLGDVSAYLMGVHGVRPPHLGKKNIGQGAAVGPIYFVPPIAAYQLESLSPQSKGLVLWILEGYILSKAELEYLVSLPQQEPRIKVVVELGGERYFRWEPLENL 154          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_ANAVT (NAD(P)H-quinone oxidoreductase subunit N OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhN PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 3
Query:  258 LSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQE 665
            + D+EK  ++ +Y P E                     +ARGLGD    LT V+ V P H+GK+           +Y PP V  +L  LPP +KGLV+WIIE  +LS  E++FL  LP L P+V+V+ E G  R F WK  ++
Sbjct:   11 IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRPPHLGKKSSGNGAAVGNVYYLPPIVGSQLEHLPPKSKGLVLWIIEGHILSDQEVEFLTDLPKLEPRVKVVVERGGDRTFRWKALKD 153          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_ACAM1 (NAD(P)H-quinone oxidoreductase subunit N OS=Acaryochloris marina (strain MBIC 11017) GN=ndhN PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  252 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQEI 668
            +++  +E+  A+ IY P E                    +SA G+GD  +  T V+ V P H+GK  I  ++ PP V Y+L  LPP AKGL +W+ + K L+K EL +L+ +    P+++V+ E G  R F W+P  +I
Sbjct:    9 KFIRTIEQSGAVGIYVPSEGGFEGRYKRRLRATGYLTLFVSAPGMGDLASYFTDVHGVRPPHLGKNQIRTYFLPPFVTYQLENLPPQAKGLALWLYDGKRLAKQELAYLSAITASEPRLKVVVELGGARSFEWQPLSDI 147          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_THEEB (NAD(P)H-quinone oxidoreductase subunit N OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhN PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.542e-19
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  252 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            +++ D+E   A+A++ P E                    +SA GLGD    LT+ + + PAH GK+ I  ++ PP V Y L  LPP+AKGLV+W+I+ K LSK E  +LA L    PK +V+ E G  R   W+P
Sbjct:    8 QFVKDLESAGALALFVPPEGGFEGRYQRRLRSKGYTTLPMSAPGLGDLAAYLTQEHGIRPAHTGKEDIRVYFQPPLVTYHLENLPPNAKGLVLWLIDGKRLSKQEFAYLAQLTQTLPKFKVVVEVGGDRVVRWEP 142          
The following BLAST results are available for this feature:
BLAST of FC923105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NDHN_CYAP41.947e-2236.99NAD(P)H-quinone oxidoreductase subunit N OS=Cyanot... [more]
NDHN_TRIEI2.542e-2238.73NAD(P)H-quinone oxidoreductase subunit N OS=Tricho... [more]
NDHN_CYAP83.320e-2239.01NAD(P)H-quinone oxidoreductase subunit N OS=Cyanot... [more]
NDHN_CYAP78.178e-2135.00NAD(P)H-quinone oxidoreductase subunit N OS=Cyanot... [more]
NDHN_ANASP4.059e-2037.06NAD(P)H-quinone oxidoreductase subunit N OS=Anabae... [more]
NDHN_NOSP76.923e-2036.96NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc... [more]
NDHN_CYAA51.181e-1935.46NAD(P)H-quinone oxidoreductase subunit N OS=Cyanot... [more]
NDHN_ANAVT1.181e-1937.06NAD(P)H-quinone oxidoreductase subunit N OS=Anabae... [more]
NDHN_ACAM11.181e-1933.81NAD(P)H-quinone oxidoreductase subunit N OS=Acaryo... [more]
NDHN_THEEB1.542e-1937.78NAD(P)H-quinone oxidoreductase subunit N OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionC31701B06EF StrClemenN Citrus clementina cDNA clone C31701B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923105 ID=FC923105; Name=FC923105; organism=Citrus clementina; type=EST; length=669bp
GAAAGCAACACAAGCTTCAATTAAGCTAAAAGAAATAGATGGCTGCAGCA
CCTTGCTTGCACTATGGGACACCTGCCTCCATCAAAATCCAACAGAAGCA
GCAACCAACACGAAACTGGATGATGATGCAAGGATTGAGAAGGAGAAATG
GTAAGGCATCTAAAAGAGTTGGAGTGACCAATTGTAGTGGTAATAGTGGC
ATTGAAATAGGGGACTTCATTGGAGGGGATCTGCTAAAACCTGATCTGGG
GCGTTGGCTTTCAGATGTGGAGAAGCACAAAGCCATTGCCATTTATACAC
CACATGAGGGTGGATATGAGGGCCGTTATCTTAATCGTCTCAGATACCTG
GGCTACTACTTCCTTGACCTTAGTGCTCGCGGCCTTGGTGATCCTGAAAC
TACTCTCACTAAAGTTTACCCTGTTTGCCCTGCTCATGTAGGAAAGCAAC
CAATAGCTAGGTGGTATTTCCCACCTGAAGTCGATTACAGGCTTGCTGCA
TTGCCCCCAAGTGCAAAAGGGCTTGTAGTCTGGATAATTGAAGCCAAGGT
TCTGTCAAAGTCAGAGTTGCAGTTCCTTGCTTTGCTTCCTACACTCCGGC
CAAAAGTCAGAGTCATTGCAGAGTGTGGAAACTGGAGGAAGTTCATGTGG
AAGCCTNCTCAAGAAATTG
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