FC923108

Overview
NameFC923108
Unique NameFC923108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 324.709 bits (831), Expect = 2.432e-88
Identity = 156/205 (76.10%), Postives = 179/205 (87.32%), Query Frame = 2
Query:   20 KPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSL--PLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHL 628
            KPGTG+ +AVK LN  G QGH+EWLAEVN+LG   HPNLVKL+GYC+ED+ RLLVYEFMPRGSLENHLFR+GS   PL W++R+K+ALGAAKGLAFLH  AE  VIYRDFKTSNILLD++YNAKLSDFGLAKD P   K+HVSTR+MGTYGYAAPEY+ TGHLT+KSDVYS+GVVLLE+L+GRR++DKNRP GE  LVEWARP L
Sbjct:   97 KPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLHN-AETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPGEQKLVEWARPLL 300          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 1.743e-86
Identity = 153/205 (74.63%), Postives = 179/205 (87.32%), Query Frame = 2
Query:   20 KPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSL--PLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHL 628
            +PGTGL +AVK LN  G QGH+EWLAEVN+LG   H +LVKL+GYC+ED+ RLLVYEFMPRGSLENHLFR+G    PL W +R+K+ALGAAKGLAFLH  +E  VIYRDFKTSNILLD++YNAKLSDFGLAKD P   K+HVSTRVMGT+GYAAPEY+ TGHLT+KSDVYSFGVVLLE+L+GRR++DKNRP+GE NLVEWA+P+L
Sbjct:   96 RPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGLYFQPLSWKLRLKVALGAAKGLAFLHS-SETRVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPIGDKSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLELLSGRRAVDKNRPSGERNLVEWAKPYL 299          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 7.322e-85
Identity = 149/208 (71.63%), Postives = 179/208 (86.06%), Query Frame = 2
Query:   11 APVKPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSL--PLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHL 628
            AP KPGTG+ +AVK LN  G QGH+EWLAE+N+LG L HPNLVKL+GYC+E++ RLLVYEFM RGSLENHLFR+G+   PL W+ R+++ALGAA+GLAFLH  A+  VIYRDFK SNILLD++YNAKLSDFGLA+D P    +HVSTRVMGT GYAAPEY+ TGHL+ KSDVYSFGVVLLE+L+GRR++DKN+P GEHNLV+WARP+L
Sbjct:   93 APSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNTRVRMALGAARGLAFLHN-AQPQVIYRDFKASNILLDSNYNAKLSDFGLARDGPMGDNSHVSTRVMGTQGYAAPEYLATGHLSVKSDVYSFGVVLLELLSGRRAIDKNQPVGEHNLVDWARPYL 299          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 4.442e-82
Identity = 144/207 (69.57%), Postives = 173/207 (83.57%), Query Frame = 2
Query:   14 PVKPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSL--PLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHL 628
            P KPGTGL +AVK LN  G QGH+EWL E+N+LG L HPNLVKL+GYC+ED+ RLLVYEFM +GSLENHLFR+G+   PLPW +R+ +AL AAKGLAFLH +  K VIYRD K SNILLDADYNAKLSDFGLA+D P    ++VSTRVMGTYGYAAPEY+ +GHL ++SDVYSFGV+LLE+L+G+R++D NRP  E NLV+WARP+L
Sbjct:   93 PTKPGTGLVIAVKKLNQEGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEHRLLVYEFMQKGSLENHLFRRGAYFKPLPWFLRVNVALDAAKGLAFLHSDPVK-VIYRDIKASNILLDADYNAKLSDFGLARDGPMGDLSYVSTRVMGTYGYAAPEYMSSGHLNARSDVYSFGVLLLEILSGKRALDHNRPAKEENLVDWARPYL 298          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 4.442e-82
Identity = 145/205 (70.73%), Postives = 174/205 (84.88%), Query Frame = 2
Query:   20 KPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLXD 634
            KPG+G+ VAVK L   G QGHKEWL EVN+LG L HPNLVKLVGYC+E + RLLVYEFMP+GSLENHLFR+G+ PL W+IRMK+A+GAAKGL FLH +A+  VIYRDFK +NILLDA++N+KLSDFGLAK  P   KTHVST+VMGT+GYAAPEYV TG LT+KSDVYSFGVVLLE+L+GRR++DK++   E +LV+WA P+L D
Sbjct:  111 KPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAIGAAKGLTFLH-DAKSQVIYRDFKAANILLDAEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKSKVGMEQSLVDWATPYLGD 314          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.094e-80
Identity = 143/205 (69.76%), Postives = 170/205 (82.93%), Query Frame = 2
Query:   20 KPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLXD 634
            +PG+G+ VAVK L   G QGHKEWL EVN+LG L HPNLV LVGYC E + RLLVYEFMP+GSLENHLFR+G+ PL W+IRMK+A+GAAKGL FLHE A+  VIYRDFK +NILLDAD+NAKLSDFGLAK  P    THVST+V+GT+GYAAPEYV TG LT+KSDVYSFGVVLLE+++GRR+MD +    E++LV+WA P+L D
Sbjct:  114 RPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAVGAAKGLTFLHE-AKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDNTHVSTKVIGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGRRAMDNSNGGNEYSLVDWATPYLGD 317          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.024e-78
Identity = 141/208 (67.79%), Postives = 170/208 (81.73%), Query Frame = 2
Query:   14 PVKPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSL---PLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHL 628
            P K  +GL +AVK LN  G QGH+EWL E+N+LG L HPNLVKL+GYC+ED+QRLLVYEFM +GSLENHLF  G+    PL W +R+K+AL AAKGLAFLH +  K VIYRD K SNILLD+D+NAKLSDFGLA+D P   +++VSTRVMGT+GYAAPEYV TGHL ++SDVYSFGVVLLE+L GR+++D NRP  E NLV+WARP+L
Sbjct:   87 PTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHSDPVK-VIYRDIKASNILLDSDFNAKLSDFGLARDGPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYL 293          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 2.068e-71
Identity = 130/206 (63.11%), Postives = 163/206 (79.13%), Query Frame = 2
Query:   11 APVKPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHL 628
            AP + G+G+ VA+K LN   +QG  EW +EVNFLG L H NLVKL+GYC ED + LLVYEFMP+GSLE+HLFR+   P PW +R+KI +GAA+GLAFLH   ++ VIYRDFK SNILLD++Y+AKLSDFGLAK  P D K+HV+TR+MGTYGYAAPEY+ TGHL  KSDV++FGVVLLE++TG  + +  RP G+ +LV+W RP L
Sbjct:  111 APSRVGSGMIVAIKRLNSESVQGFAEWRSEVNFLGMLSHRNLVKLLGYCREDKELLLVYEFMPKGSLESHLFRRND-PFPWDLRIKIVIGAARGLAFLHS-LQREVIYRDFKASNILLDSNYDAKLSDFGLAKLGPADEKSHVTTRIMGTYGYAAPEYMATGHLYVKSDVFAFGVVLLEIMTGLTAHNTKRPRGQESLVDWLRPEL 314          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.094e-70
Identity = 135/207 (65.22%), Postives = 156/207 (75.36%), Query Frame = 2
Query:   29 TGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLP-----LPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLXD 634
            TG  VAVK L+  GLQG++E+L EV  L  L HPNLV L+GYC + DQRLLVYEFMP GSLE+HL     LP     L W++RMKIA GAAKGL FLH++A  PVIYRDFK+SNILLD  ++ KLSDFGLAK  P   K+HVSTRVMGTYGY APEY MTG LT KSDVYSFGVV LE++TGR+++D   P+GE NLV WARP   D
Sbjct:  108 TGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLH---DLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSEMPHGEQNLVAWARPLFND 311          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.215e-65
Identity = 123/200 (61.50%), Postives = 147/200 (73.50%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHL--FRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLXD 634
            VA+K L+  G+QG +E++ EV  L    HPNLVKL+G+C E DQRLLVYE+MP+GSLE+HL     G  PL W+ RMKIA GAA+GL +LH+    PVIYRD K SNILL  DY  KLSDFGLAK  P   KTHVSTRVMGTYGY AP+Y MTG LT KSD+YSFGVVLLE++TGR+++D  +   + NLV WARP   D
Sbjct:  129 VAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGKKPLDWNTRMKIAAGAARGLEYLHDRMTPPVIYRDLKCSNILLGEDYQPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDNTKTRKDQNLVGWARPLFKD 328          
The following BLAST results are available for this feature:
BLAST of FC923108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APK1B_ARATH2.432e-8876.10Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK1A_ARATH1.743e-8674.63Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
NAK_ARATH7.322e-8571.63Probable serine/threonine-protein kinase NAK OS=Ar... [more]
BIK1_ARATH4.442e-8269.57Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
APK2B_ARATH4.442e-8270.73Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK2A_ARATH1.094e-8069.76Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
Y3545_ARATH1.024e-7867.79Probable receptor-like protein kinase At3g55450 OS... [more]
CX32_ARATH2.068e-7163.11Probable serine/threonine-protein kinase Cx32, chl... [more]
PBS1_ARATH5.094e-7065.22Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
RLCK7_ARATH2.215e-6561.50Probable serine/threonine-protein kinase RLCKVII O... [more]

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Properties
Property NameValue
Genbank descriptionC31701B09EF StrClemenN Citrus clementina cDNA clone C31701B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923108 ID=FC923108; Name=FC923108; organism=Citrus clementina; type=EST; length=636bp
GAATGGAACTGCTCCAGTGAAACCCGGTACTGGGCTTACTGTTGCAGTTA
AAACCTTAAATCATGGTGGACTTCAGGGACATAAAGAGTGGCTGGCGGAA
GTTAATTTCCTTGGCAACCTCCTCCATCCCAATTTGGTTAAATTGGTTGG
ATACTGCATCGAAGATGATCAAAGGCTGCTGGTATATGAGTTTATGCCTC
GAGGGAGTTTGGAAAACCACCTCTTCAGAAAAGGGTCCTTGCCACTTCCA
TGGTCTATCAGAATGAAGATTGCACTTGGTGCTGCTAAGGGTCTTGCCTT
TCTTCATGAAGAAGCTGAAAAACCTGTGATATATCGTGATTTCAAAACAT
CAAATATTTTATTAGATGCGGATTACAATGCCAAACTCTCTGATTTTGGA
CTTGCCAAAGACGCCCCAGAGGATGGTAAAACACATGTATCTACTCGAGT
AATGGGAACGTATGGATATGCTGCTCCAGAGTATGTGATGACTGGACATT
TGACATCAAAGAGTGATGTCTATAGCTTTGGAGTAGTTTTACTTGAAATG
TTGACTGGACGAAGATCCATGGATAAAAACCGACCAAATGGGGAACACAA
CCTTGTGGAATGGGCAAGACCGCATCTTGNGGACAA
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