FC923115

Overview
NameFC923115
Unique NameFC923115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13818 contig Ccv1_Contig13818:23..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_ARATH (Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.258e-82
Identity = 142/185 (76.76%), Postives = 164/185 (88.65%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLXE 661
            MRPILMKGHERPLT+L+YN++GDLLFSCAKDHTPT+WFADNGERLGTYRGHNGAVWCCDVSRDS  LITGSADQTAKLW+V++G +LFTF F++P RSVDFAVGD+LAVITTD F++  +AIHVKRIA DP +Q  ESVL+L  P G  RINRAVWGPLN+TI+S GED ++RIWD ETGKLL +
Sbjct:    1 MRPILMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTAAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLKQ 185          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_CULQU (Eukaryotic translation initiation factor 3 subunit I OS=Culex quinquefasciatus GN=CPIJ018275 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.654e-40
Identity = 80/185 (43.24%), Postives = 117/185 (63.24%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL----KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            M+P++++GHER +T +KYN++GDL+FS AKDH P+VWF+ NGERLGTY GH GAVWC DV   +  LITG+ D + KLW+VETG+ L T   +S AR+ +F+     A  +TD  M  NS + +  +    +    +S ++     +  Q +I   +WG L+ T+I+  E+  +RIWD  T K L
Sbjct:    1 MKPLMLQGHERAITQIKYNREGDLIFSTAKDHKPSVWFSLNGERLGTYNGHQGAVWCVDVDWTTTRLITGAGDMSTKLWDVETGSVLGTIPCNSAARTANFSFSGNQASYSTDKAMGHNSELFIIDVRNVDSSISSQSPVLKLTMNQSIQTKITSMLWGALDETVITGHENGSIRIWDLRTAKEL 185          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_AEDAE (Eukaryotic translation initiation factor 3 subunit I OS=Aedes aegypti GN=AAEL013144 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.527e-40
Identity = 79/183 (43.17%), Postives = 115/183 (62.84%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES--VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            M+P++++GHER +T +KYN++GDL+FS AKDH P+VWF+ NGERLGT+ GH GAVWC DV   +  LITGS D + KLW+VETG+ L T   +S AR+V+F+     A  +TD  M  N  + +  +    +    +S  + +    Q +I   +WG L+ T+I+  E+  +RIWD    K L
Sbjct:    1 MKPLMLQGHERAITQIKYNREGDLIFSTAKDHKPSVWFSLNGERLGTFNGHQGAVWCVDVDWTTTRLITGSGDMSTKLWDVETGSVLGTIPCNSAARTVNFSYSGNQASYSTDKAMGHNCELFIIDVRNVDSSISNQSPVLKLTMNQQSKITSMLWGALDETVITGHENGSIRIWDLRAAKEL 183          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_SCHPO (Eukaryotic translation initiation factor 3 subunit I OS=Schizosaccharomyces pombe GN=tif34 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39
Identity = 75/182 (41.21%), Postives = 113/182 (62.09%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPI+++GHERPLT +KYN DGDLLFSCAKD    VWF+ NGERLGTY GH GA+W CD+++ S  +++G+AD T +LW+V+TG QL+ + F +  + V+F   D   +  T+  M     + V R+    +D   E+ L ++   + +   A W  L++ + +  ED  V  +D  TG+ +
Sbjct:    1 MRPIILQGHERPLTQIKYNHDGDLLFSCAKDKVINVWFSHNGERLGTYEGHTGAIWTCDINKSSTLMVSGAADNTMRLWDVKTGKQLYKWEFPTAVKRVEFNEDDTRILAVTEERMGYAGTVTVFRVPISESDAAAETPLYVITTRESKATVAGWSYLSKFLFTGHEDGSVSRYDAITGEFV 182          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROSI (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila simulans GN=Trip1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.227e-38
Identity = 75/180 (41.67%), Postives = 111/180 (61.67%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROSE (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila sechellia GN=Trip1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.227e-38
Identity = 75/180 (41.67%), Postives = 111/180 (61.67%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROME (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila melanogaster GN=Trip1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.227e-38
Identity = 75/180 (41.67%), Postives = 111/180 (61.67%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D TAK+W+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROPS (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila pseudoobscura pseudoobscura GN=Trip1 PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.233e-37
Identity = 79/182 (43.41%), Postives = 109/182 (59.89%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS---AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N     I V+      ADQ     L +   + +I    WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTTKLWDVEYGTIIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNCELFIIDVRNADSTLADQ--TPTLRIPMTESKITSMQWGPLDETIITGHDNGNIAIWDVRKGQ 180          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROPE (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila persimilis GN=Trip1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.233e-37
Identity = 79/182 (43.41%), Postives = 109/182 (59.89%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS---AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N     I V+      ADQ     L +   + +I    WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTTKLWDVEYGTIIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNCELFIIDVRNADSTLADQ--TPTLRIPMTESKITSMQWGPLDETIITGHDNGNIAIWDVRKGQ 180          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROER (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila erecta GN=Trip1 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.103e-37
Identity = 74/180 (41.11%), Postives = 110/180 (61.11%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            MRP++++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D T K+W+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTTKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 180          
The following BLAST results are available for this feature:
BLAST of FC923115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
EIF3I_ARATH1.258e-8276.76Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_CULQU2.654e-4043.24Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_AEDAE4.527e-4043.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_SCHPO8.537e-3941.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROSI7.227e-3841.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROSE7.227e-3841.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROME7.227e-3841.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROPS1.233e-3743.41Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROPE1.233e-3743.41Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROER2.103e-3741.11Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC31701C04EF StrClemenN Citrus clementina cDNA clone C31701C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923115 ID=FC923115; Name=FC923115; organism=Citrus clementina; type=EST; length=662bp
GATCTCTCCCACTAGCTTTGCTTTGCGATCTCAAGGCTTTCCAACGCTCC
ACCGGAAACTCCATTCGTCGCGGAATTCAGGAAAACAGAGAAAGAAGAAG
AAAAAAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTT
AACATATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCTA
AGGATCACACACCCACCGTTTGGTTCGCTGACAACGGCGAGCGTCTTGGC
ACATACCGTGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGA
TTCGATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGA
ATGTTGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCAGCT
AGGTCTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGA
TCCTTTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAAGAG
ATCCTGCTGATCAGGGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAG
GGAAGAATAAACAGAGCAGTTTGGGGACCGCTAAACAGGACTATCATTAG
TGCTGGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAAC
TGCTTNAAGAGT
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