FC923126

Overview
NameFC923126
Unique NameFC923126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3310 contig Ccv1_Contig3310:414..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923126 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.806e-18
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 2
Query:    2 KDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 145
            KDDLRLPTD+ LLTQ+KDGFAEGKDLV++VMS+MGEEQICALKDIGPK
Sbjct:  112 KDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of FC923126 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.163e-18
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 2
Query:    2 KDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 145
            KDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MGEEQIC +KDIGPK
Sbjct:  112 KDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of FC923126 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.163e-18
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 2
Query:    2 KDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 145
            KDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MGEEQIC +KDIGPK
Sbjct:  112 KDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of FC923126 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.066e-17
Identity = 40/48 (83.33%), Postives = 48/48 (100.00%), Query Frame = 2
Query:    2 KDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 145
            KDDL+LPTD++LLTQ+KDGFA+GKDLV++VMS+MGEEQICALKDIGPK
Sbjct:  112 KDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of FC923126 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 2
Query:    2 KDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 145
            KDDL+LPTD+ LLTQ+KDGF EGKDLV++VMS+MGEEQICALKDIGPK
Sbjct:  112 KDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of FC923126 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 40/49 (81.63%), Postives = 48/49 (97.96%), Query Frame = 2
Query:    2 KDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 148
            KDDLRLPTDE LL+Q+KDGFAEGKDLV++VMS+MGEE+IC+LKDIGPK+
Sbjct:  112 KDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of FC923126 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.051e-17
Identity = 40/49 (81.63%), Postives = 48/49 (97.96%), Query Frame = 2
Query:    2 KDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 148
            KDDL+LPTD++LLTQ+KDGFAEGKDLV++VMS+MGEEQICALKDIG K+
Sbjct:  113 KDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGKN 161          
BLAST of FC923126 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/48 (83.33%), Postives = 47/48 (97.92%), Query Frame = 2
Query:    2 KDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 145
            KDDLRLPTD++LL+Q+KDGFAEGKDLV++VMS+MGEEQI ALKDIGPK
Sbjct:  112 KDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of FC923126 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.011e-16
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 KDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 145
            KDDLRLPTDETL+ Q+K+GF  GKDLV+TV S+MGEEQICALKD+GPK
Sbjct:  113 KDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160          
BLAST of FC923126 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.011e-16
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 KDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 145
            KDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MGEEQIC +KD+GPK
Sbjct:  112 KDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
The following BLAST results are available for this feature:
BLAST of FC923126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
IF5A2_NICPL2.806e-1887.50Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A5_SOLTU8.163e-1885.42Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_SOLLC8.163e-1885.42Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A2_MEDSA1.066e-1783.33Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A_SENVE1.818e-1783.33Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A_MANES1.818e-1781.63Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A1_MEDSA4.051e-1781.63Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A4_SOLTU1.539e-1683.33Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A_MAIZE2.011e-1679.17Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A1_TOBAC2.011e-1679.17Eukaryotic translation initiation factor 5A-1 OS=N... [more]

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Properties
Property NameValue
Genbank descriptionC31701D04EF StrClemenN Citrus clementina cDNA clone C31701D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923126 ID=FC923126; Name=FC923126; organism=Citrus clementina; type=EST; length=398bp
CAAGGATGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCTCA
AGGACGGTTTTGCTGAGGGGAAGGACTTGGTTTTGACTGTCATGTCTTCA
ATGGGCGAGGAGCAGATCTGTGCCCTCAAGGATATTGGCCCAAAGTCGTA
GTTGCGCGATATGTGATTATCTTCTGTGTCTGGTTGCATCTGTTTTTTGG
AAAAATATTTTAATCATCTAGAGTTTGCCTTTAATATTTGTAGCGTCTTT
GTTTTGTGGTGAGAATTGCAAGCTGCCTGGAATATGTAGTTCTTTTGATT
GGCGGCTAAAAAATTTATGGTGTTCAATTTCTCTAATGAATTATAATGTT
AGAAAGAAATCGTCTTTGTTATNAAAAAAAAAAAAAAAAAAAAAAAAA
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