FC923128

Overview
NameFC923128
Unique NameFC923128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14389 contig Ccv1_Contig14389:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923128 vs. ExPASy Swiss-Prot
Match: RCCR_ARATH (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.980e-57
Identity = 110/171 (64.33%), Postives = 136/171 (79.53%), Query Frame = 3
Query:  183 MDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPESRPYFSSS 692
            M+ H++  R+KFMEFPY S   +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A+ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS  SLVLILDL  RKDLVL+PDYL+ +Y+ T LD +RQ L K+PE  PY S S
Sbjct:   41 MEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPS 211          
BLAST of FC923128 vs. ExPASy Swiss-Prot
Match: RCCR_HORVU (Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.325e-24
Identity = 51/97 (52.58%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  402 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPESRPYFSSS 692
            IDF+L S +H ++P GA ++ITSL   LN+STDAP+ ++E IQ SP+S+V++LDL PRKDL LHP+Y++ +YE T +D+ R+++E++P++RPY S S
Sbjct:    1 IDFMLQSSLHCKVPNGA-IDITSLFINLNASTDAPHFIMEFIQGSPTSMVVLLDLLPRKDLALHPEYIEKYYEDTEVDKQRKIIEQLPQARPYLSPS 96          
The following BLAST results are available for this feature:
BLAST of FC923128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RCCR_ARATH2.980e-5764.33Red chlorophyll catabolite reductase, chloroplasti... [more]
RCCR_HORVU3.325e-2452.58Red chlorophyll catabolite reductase (Fragment) OS... [more]
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Properties
Property NameValue
Genbank descriptionC31701D06EF StrClemenN Citrus clementina cDNA clone C31701D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923128 ID=FC923128; Name=FC923128; organism=Citrus clementina; type=EST; length=746bp
CCGGGGGACGAAGTGATTAAGAACGAATGGCTGTGAACCACTTATGCCAG
TGGCAGTATTTACGCTTCCAGCTCTCTCATCCATCGGCTCCGGCTTGCAG
ATATTTATCTCCTTCGAGATCAAAGTCCTCAACGTCGTCAACCGCCAAAG
TCAATTGTTCTGCCGCACCATCGTCATCTCCGATGGACTCGCACAACGAA
GGCCGTAAGAAGTTCATGGAATTCCCCTACGCTTCAGGCCCTGTTAGGCA
GCTGATGGTTGATCTCGTATCAACGGTGGAGAATACCCTCGATTCGCAGC
TACTCCCTTGCACTCTGCCACCAGATGTACAGTATTACGAGAACCAAAAT
GGCACTGCTCAAGCTTCTCTTCAAATCAGATCCGGGCTCAAGTCCTCACT
GATTGATTTCATACTGGGAAGTTGGGTACACAGTGAGCTACCAACAGGAG
CAGCATTGAACATAACAAGCCTTTCAGCATATCTAAACTCTTCCACTGAT
GCACCAAACTTGCTAATTGAGCTCATCCAGAGTAGCCCTTCTTCTCTAGT
CCTCATCCTTGACTTGTCTCCTCGAAAGGATCTTGTCCTCCATCCCGACT
ATCTTCAAACTTTCTATGAAAGCACACGGTTGGATGAATATAGGCAAATG
CTTGAGAAAGTACCTGAAAGTAGACCCTACTTCTCGTCTTCCTTTACTTA
GATGCGTCATCTCTCCTCAGCATTATGGTCGTGTAGATCTGAACTG
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