FC923129

Overview
NameFC923129
Unique NameFC923129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923129_ssr199 microsatellite FC923129_ssr199:199..210. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11750 contig Ccv1_Contig11750:9..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_HYDTH (Chaperone protein dnaJ OS=Hydrogenobacter thermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDRALK 426
            D+Y++LGV++ AT  +IK+AYR LA++YHPD+S D  A+E FK I+ AY +LS+E  R +YDR LK
Sbjct:    5 DYYQILGVSKDATAEEIKKAYRRLAKEYHPDISADENASEKFKEINEAYHILSDEERRKEYDRILK 70          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_MICAN (Chaperone protein dnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGV++ A   DIKRAYR LARKYHPDV+K+  A E FK I+ AYE+LS   TR +YDR
Sbjct:    4 DYYEILGVSRDAGKEDIKRAYRRLARKYHPDVNKEPGAEEHFKEINRAYEILSEPETRNRYDR 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCN (Chaperone protein dnaJ OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGV++SA+  +IK+AYR LA+KYHPDVSK+  A E FK +  AYEVLS+E  R +YD+
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRRLAKKYHPDVSKEENAVEKFKEVQEAYEVLSDEQKRAQYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_EXISA (Chaperone protein dnaJ OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLG+ +SA+  DIKRAYR LAR+YHPD+++++ AA+ FK I  AYEVLS+E  R +YDR
Sbjct:    5 DYYEVLGLDKSASAQDIKRAYRKLARQYHPDINQEADAADKFKEIGEAYEVLSDEQKRAQYDR 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAVT (Chaperone protein dnaJ OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGVA+ A   +IK+AYR LARKYHPDV+K+  A E FK I+ AYEVLS   TR +YDR
Sbjct:    4 DYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRARYDR 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_ANASP (Chaperone protein dnaJ OS=Anabaena sp. (strain PCC 7120) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGVA+ A   +IK+AYR LARKYHPDV+K+  A E FK I+ AYEVLS   TR +YDR
Sbjct:    4 DYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRARYDR 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_EXIS2 (Chaperone protein dnaJ OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGVA+ A+ A+IKRAYR LAR YHPDV+K++ A + FK +S AYEVLS++  R +YD+
Sbjct:    5 DYYEVLGVARDASAAEIKRAYRKLARTYHPDVNKEADADQKFKELSEAYEVLSDDNQRARYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP7 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGV++ A   +IKRAYR LARKYHPDV+K+  A E FK I+ AYE+LS   TR +YDR
Sbjct:    4 DYYEILGVSRDANKDEIKRAYRRLARKYHPDVNKEIGAEERFKEINRAYEILSEPETRARYDR 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP4 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y +LGV++ A   D+K+AYR LARKYHPDV+K++ A E FK I+ AYEVLS+  TR +YDR
Sbjct:    4 DYYDILGVSRDAGQEDLKQAYRRLARKYHPDVNKEAGAEERFKEINRAYEVLSDPETRARYDR 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS-RAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGVA++AT  +IK+AYR LARKYHPDV+KD   AAE FK I+ AYEVLS+   R +YD+
Sbjct:    4 DYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRARYDQ 67          
The following BLAST results are available for this feature:
BLAST of FC923129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
DNAJ_HYDTH1.645e-1454.55Chaperone protein dnaJ OS=Hydrogenobacter thermoph... [more]
DNAJ_MICAN2.148e-1460.32Chaperone protein dnaJ OS=Microcystis aeruginosa (... [more]
DNAJ_BACCN2.805e-1458.73Chaperone protein dnaJ OS=Bacillus cereus subsp. c... [more]
DNAJ_EXISA3.664e-1458.73Chaperone protein dnaJ OS=Exiguobacterium sp. (str... [more]
DNAJ_ANAVT4.785e-1460.32Chaperone protein dnaJ OS=Anabaena variabilis (str... [more]
DNAJ_ANASP4.785e-1460.32Chaperone protein dnaJ OS=Anabaena sp. (strain PCC... [more]
DNAJ_EXIS26.249e-1458.73Chaperone protein dnaJ OS=Exiguobacterium sibiricu... [more]
DNAJ_CYAP76.249e-1458.73Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNAJ_CYAP46.249e-1458.73Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNAJ_CARHZ8.162e-1460.94Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]

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Properties
Property NameValue
Genbank descriptionC31701D07EF StrClemenN Citrus clementina cDNA clone C31701D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923129 ID=FC923129; Name=FC923129; organism=Citrus clementina; type=EST; length=699bp
GGAACAAATGCATGAACGATAATGCAGGCGCAGCTACTGGTGGGACCCAT
AACTCCCACCACCGGCTCCGATGCGTTCTCCTCCATCATCAAAAACAGTT
TCCTGATCTCCTCTCCTCGCCGCAGCACCACCGGCAGTAACCGCCACAGA
AGAACCCGCCACCGCTTGGTGGTCGCGTCATCGTCTTGGTCATCATCCGC
GGCGGCGGCGGCCATAAACGGCGAGCCGGACCATTACAAAGTTCTGGGCG
TCGCTCAAAGTGCCACGCTAGCTGATATAAAGAGGGCTTATCGCCTCCTC
GCTCGTAAGTATCATCCTGATGTTAGCAAGGATTCACGAGCGGCTGAAGT
GTTCAAGACCATCAGTTGTGCTTATGAAGTATTATCTAATGAAGTAACAA
GAACTAAGTATGATCGGGCACTCAAATTTCGAAATGATAGTGACAGATCA
CGTAGAGGAAACAGGAGGTACAGCAGTGAATTTGAAGACGGGGTAAGGAT
CTCTACATGGGCTGAACTGAGGCGAAAACTGCAATATGAGAGACATTGGA
AAAATTATAACTCANAAGAAGAGTATTCTTCCTTCTATCGTAAAGCACCA
GTCCGGGAAGTTCAAGAGGAAAACCCAGGTGATAAGAGAGGCTCCTTTAC
TGCAGTGCTAAGATCAGCATTTATCTCTTTATCTTACTGAANGTCTTTG
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