FC923139

Overview
NameFC923139
Unique NameFC923139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9428 contig Ccv1_Contig9428:116..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 5.226e-102
Identity = 186/212 (87.74%), Postives = 199/212 (93.87%), Query Frame = 3
Query:  102 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPRDRQIMWN*DDVSAVRKSMC 737
            G YRA+DDYDYLFK+VLIGDSGVGKSNLLSRF+RNEF+LESKSTIGVEFATRSIR DDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRHVTFENVERWLKELRDHTD NIVIMLVGNKADLRHLRAVSTEDA AFAERENTFFMETSALES+NVENAFTEVLT+IY+VV RKALE+GDDPAALP+ + I    DDVSAV+K  C
Sbjct:    3 GGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVGKDDVSAVKKVGC 214          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 2.690e-90
Identity = 167/210 (79.52%), Postives = 186/210 (88.57%), Query Frame = 3
Query:  108 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPRDRQIMWN*DDVSAVRKSMC 737
            YRA+DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS++ D K+VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWLKELRDHTD NIV+MLVGNK+DLRHL AV T++  AFAERE+ +FMETSALES NVENAF EVLTQIYR+VS++++E GDD  + P   + +   DDVSAV+K  C
Sbjct:    5 YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINIKDDVSAVKKGGC 214          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.250e-87
Identity = 162/213 (76.06%), Postives = 183/213 (85.92%), Query Frame = 3
Query:   99 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPRDRQIMWN*DDVSAVRKSMC 737
            M  YRADD+YDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS+  DDK++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR+HTD NIV+MLVGNK+DLRHL AV TEDA +FAE+E+ +FMETSALE+ NVENAF EVLTQI+ +VS+KA+E   + A +P     +    DVSAV+K  C
Sbjct:    1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIGKDVSAVKKGGC 213          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.170e-85
Identity = 153/190 (80.53%), Postives = 174/190 (91.58%), Query Frame = 3
Query:   99 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPA 668
            M  YRADD+YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT+S+  D+K++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT+ENV RWLKELRDHTD NIV+ML+GNK+DLRHL AVST++A   AERE  +FMETSALE+ NVENAFTE LTQIYR+VS+KA+E GD+ A
Sbjct:    1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGA 190          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.804e-85
Identity = 157/215 (73.02%), Postives = 182/215 (84.65%), Query Frame = 3
Query:   99 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGD--DPAALPRDRQIMWN*DDVSAVRKSMC 737
            MG YR DD+YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT+++  D K+VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFEN  RWLKELRDHTD NIV+ML+GNK+DLRHL AV TED  +FAERE+ +FMETSALE+ NVENAFTEVLTQIYR+VS++A+E GD    + LP   Q +   +D S +++  C
Sbjct:    1 MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGC 215          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.881e-84
Identity = 155/215 (72.09%), Postives = 181/215 (84.19%), Query Frame = 3
Query:   99 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDP--AALPRDRQIMWN*DDVSAVRKSMC 737
            M  Y+ADD+YDYLFK+VLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFAT+S+  D K++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFE   RWLKELRDHTD NIV+ML+GNK+DLRHL  VSTED  AFAE+E+ +FMETSALE+ NVENAF+EVLTQIYR+VS++A+E GD P  + +P   Q +   +D S + +  C
Sbjct:    1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRC 215          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 8.382e-84
Identity = 156/214 (72.90%), Postives = 185/214 (86.45%), Query Frame = 3
Query:   99 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD-PAALPRDRQIMWN*DDVSAVRKSMC 737
            M  YR +DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATR+++ D K+VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFENV+RWLKEL++HTD NIV+MLVGNK+DLRHL AV TED  ++AE+E+  FMETSALE+ NVE+AF EVLTQIYR+ S+K +E G+D  A++P+  +I    +DVSA++K  C
Sbjct:    1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVPKGEKIEVK-NDVSALKKLGC 213          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.599e-82
Identity = 148/213 (69.48%), Postives = 182/213 (85.45%), Query Frame = 3
Query:   99 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPRDRQIMWN*DDVSAVRKSMC 737
            M  YRAD++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT++ + + K+VKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRH TFEN  RWL+ELR HTD NIV+ML+GNK DLRHL AV TE+A AFAERE+ +FMETSAL++ NVENAFTEVLTQI+++VS+++++ G + A LP   + +   +D S +++  C
Sbjct:    1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINVKEDGSVLKRMGC 213          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.932e-80
Identity = 149/197 (75.63%), Postives = 169/197 (85.79%), Query Frame = 3
Query:  105 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPRDRQIM 695
            +++ DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI+ D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+ VTFENVERWLKELRDH DSNIVIMLVGNK+DL+HLR V TE A AF ERE   F+ETSALES NVE AF ++LT+IY +VS+K L+  D+   +   R ++
Sbjct:    2 SHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVI 198          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 293.508 bits (750), Expect = 8.118e-79
Identity = 143/177 (80.79%), Postives = 162/177 (91.53%), Query Frame = 3
Query:  117 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 647
            DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A AFAE+ N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
The following BLAST results are available for this feature:
BLAST of FC923139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_TOBAC5.226e-10287.74Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ2.690e-9079.52Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1C_ARATH1.250e-8776.06Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPT3_NICPL1.170e-8580.53Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11D_LOTJA5.804e-8573.02Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11E_LOTJA2.881e-8472.09Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH8.382e-8472.90Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAA1A_ARATH4.599e-8269.48Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE1.932e-8075.63Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11B_RAT8.118e-7980.79Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC31701E05EF StrClemenN Citrus clementina cDNA clone C31701E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923139 ID=FC923139; Name=FC923139; organism=Citrus clementina; type=EST; length=749bp
GAGAAGCATTTATTAAATCTCTTTCGCGTCAGATGATCTGCTAATCCCAA
AAAAATTAATTAAGGAATATACAAATACATAAGAGAACAAAAAGAGAAAT
GGGTGCGTACAGAGCGGACGATGACTATGATTATTTGTTCAAGGTGGTTT
TGATCGGCGACTCCGGCGTCGGAAAATCGAACCTTTTGTCCAGGTTCACA
CGCAACGAGTTTAGCCTCGAATCAAAGTCCACCATTGGCGTCGAGTTTGC
TACTCGGAGTATCCGTTGTGATGATAAGATCGTCAAGGCTCAGATTTGGG
ATACCGCCGGCCAAGAAAGGTATCGTGCAATCACAAGTGCATACTATCGA
GGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCACGCGTCATGTTACATT
TGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAGATCACACAGATTCAA
ACATTGTGATCATGCTTGTTGGTAACAAAGCAGATCTACGCCACCTGAGA
GCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGAACGAGAAAACACTTT
TTTTATGGAAACATCTGCCCTTGAGTCCATGAATGTGGAGAATGCATTCA
CAGAGGTGCTGACCCAGATCTATCGTGTTGTAAGCAGGAAGGCTCTCGAA
ATTGGAGATGACCCAGCAGCTTTGCCCAGGGACAGACAAATCATGTGGAA
CTAAGATGACGTATCAGCGGTAAGAAAGTCGATGTGTTCAAAACTAATA
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