FC923147

Overview
NameFC923147
Unique NameFC923147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14393 contig Ccv1_Contig14393:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923147 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  436 DQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRF 696
            D  ++ GFE P+SP++SY+N+  G ED +++PP VPPHLQ TLL+ PA+  D    LP PQ+VILNHLY++      SVVALG THRF
Sbjct:  187 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRF 274          
BLAST of FC923147 vs. ExPASy Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  445 TVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRF 696
            ++V FE P SPD SY    P  ED A++P AVPP L  TLL    + + + I   PQ+V+LNH++IE    P+S+VALG THRF
Sbjct:  188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTEETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRF 268          
The following BLAST results are available for this feature:
BLAST of FC923147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KINB2_ARATH2.199e-1954.55SNF1-related protein kinase regulatory subunit bet... [more]
KINB1_ARATH2.516e-1548.81SNF1-related protein kinase regulatory subunit bet... [more]
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Properties
Property NameValue
Genbank descriptionC31701F02EF StrClemenN Citrus clementina cDNA clone C31701F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923147 ID=FC923147; Name=FC923147; organism=Citrus clementina; type=EST; length=698bp
GATCGCCAAATGACAGCAAGGCCGGAGTTCGCTTGTTCGTGTCTTTGCTC
CCCCCTTTTCCAGGCTCCTCTCCTCTTCTCTCTCACTCTTGCTTGCAATT
TGCTCTGCTGCTCTGCTCTTCTCTGGTCACAATATATTATATTTTTCTTC
GAAATTCCTTTTTTTTCTCTGTTATTTCCCATCAGTTTCATTCTTTTCCA
TTTTTTTTTTAATTTTCATTCATGAGAATTTTTCAATTTCCAAAGATCTT
TATGTAGTAAGTAGCCAATTGTATTCTTCTCATTTCAGGTGGCGGTGAAA
GGTTGCGTCTTGGTCATTGAAGAATTTTAGTCTTAGCTCAGTCGGGGTCA
GTTGTGTTGCCTTCTTTCTCTTTTGATGATTTGGTGCCATTAGGATTTCT
CATCCAACATGAACCAATATGATGATGAAAATCATGATCAGGCAACAGTA
GTTGGATTTGAAGTCCCAAAGTCGCCCGATTCAAGTTACAACAATGTGTA
TCCTGGGAACGAGGATGAGGCACGCGACCCTCCTGCTGTGCCTCCTCATT
TGCAACACACATTGCTAAGCTATCCAGCAAGCAGGGATGCTTCTGGAATT
CTTCCTGCACCCCAGAATGTGATTCTAAACCACCTTTACATTGAGAATCG
AGATGTGCCACGTTCTGTGGTGGCACTTGGATTTACTCATCGATTCCG
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