FC923157

Overview
NameFC923157
Unique NameFC923157
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923157_ssr159 microsatellite FC923157_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923157_ssr32 microsatellite FC923157_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923157_ssr167 microsatellite FC923157_ssr167:167..178. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9391 contig Ccv1_Contig9391:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923157 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.549e-76
Identity = 133/175 (76.00%), Postives = 152/175 (86.86%), Query Frame = 1
Query:  151 PPSEEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPS-NNPLEPVIHAFNTWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWS 672
            P S   ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +Q YV YSP++ P+ NNPLEPVI  F+TWS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAIT+GGFESLF+QIF T+PNE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WS
Sbjct:   29 PSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWS 203          
BLAST of FC923157 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 71/190 (37.37%), Postives = 101/190 (53.16%), Query Frame = 1
Query:  133 STLTEAPPSEEEERKK---WGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWS 672
            ST  +AP       KK   W   ++      S  PD QKAAS ++        +S  E S  D    + +E V      W       + K E++A N W +L+T PS ++AA G++  + K   EGG+E +F+Q F TDP E+L  +FACYLST+ GPV G LY+S+A++A+CSD PL +     Q  WS
Sbjct:   53 STPVKAPSRTSSGSKKSVHWSPELVSG----SQEPD-QKAASSSSAGSNPYIARSPAETS--DASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY-KNGDQTEWS 234          
BLAST of FC923157 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 66/163 (40.49%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  205 PAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWS 672
            P  P   P    A +  AE+        YV  SP  +   N ++ V      W       + KAE +A N W +LKTGPSV++AA  ++    K + EGG+E +FKQ F   P+EKL KT+ACYLST+ GPV G +YLST ++AF SD PL +     Q  WS
Sbjct:   45 PPPPQPIPTGAAATTMPAESNP------YVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY-KEGEQTLWS 197          
BLAST of FC923157 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 57/166 (34.34%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  163 EEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIW-HNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPL 636
            + E   W   ++      S  PD +  +S +A        ++  E S  D      +E V      W       + KAE++A N W H L+       AA G++  + K + EGG+E +F+Q F T P E+L+ +FACYLST+ GPV G LY+STA++A+CSD  L
Sbjct:   24 DRENLHWNPELVSE----SPAPDEKALSSSSAARSNPYVARAPTETS--DASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL 176          
BLAST of FC923157 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 36/97 (37.11%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQ 660
            K ++    +    K GP ++E    K++L A+ +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G+
Sbjct:   56 KNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGE 152          
BLAST of FC923157 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSG 657
            KAE +   +  +LK  PS+S+AA  +++   K I EGG E +F++ F     EKL  +F CY+STT+GPV G +Y+S  R+AFCSD  +   + +G
Sbjct:   66 KAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAG 161          
BLAST of FC923157 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  409 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSG 657
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G
Sbjct:   69 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQG 151          
BLAST of FC923157 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  409 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSG 657
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT G +AG L++S+ ++AFCS+R +  T+P G
Sbjct:   61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQG 143          
BLAST of FC923157 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSG 657
            K +     +    K  P ++E    K++L A+ +  GG E +FK++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G
Sbjct:   55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQG 150          
The following BLAST results are available for this feature:
BLAST of FC923157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH1.549e-7676.00GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH5.586e-2637.37GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH3.065e-2440.49GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML3_ARATH3.282e-1834.34Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML8_ARATH1.167e-1537.11Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML2_ARATH1.991e-1541.67GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML6_ARATH2.601e-1543.37GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH7.567e-1543.37GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH1.686e-1437.50GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionC31701F12EF StrClemenN Citrus clementina cDNA clone C31701F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923157 ID=FC923157; Name=FC923157; organism=Citrus clementina; type=EST; length=709bp
GGTGACCGTGAATAACAATAAATCCATCAGAATTTATTTATTTATTTATT
TTTGTTCTCATAGCAATAGCCTCAACCTTCCAGTCAATCGACAACCAGCA
TCACCATGACAAGCACACCAGAAAAATTGTCAAGCACTCTGACAGAAGCT
CCACCTTCAGAAGAAGAAGAAAGAAAGAAATGGGGTACCCATATCATGGG
AGCGCCAGCGGTGCCTAGTGCTCACCCAGACAATCAAAAGGCAGCCTCAT
GGAACGCCGAAAACCGCCAGCAAATCTATCATCAGTCTTATGTCGAGTAC
TCTCCTATCGACAAGCCAAGTAACAACCCTTTGGAGCCTGTAATTCACGC
GTTCAATACTTGGAGCACCAAAGCTGAGACCATTGCCCGCAACATCTGGC
ATAATCTGAAAACCGGTCCCTCTGTGTCGGAAGCTGCATGGGGGAAGGTG
AATTTGACAGCGAAAGCAATAACAGAGGGCGGATTTGAGTCTCTCTTCAA
GCAGATTTTTGCAACTGATCCGAATGAGAAGCTAAAGAAGACCTTTGCGT
GTTATCTTTCTACAACAACTGGTCCTGTTGCTGGAACACTCTATTTATCA
ACGGCCCGTGTGGCTTTTTGCAGTGATCGTCCCTTGTGTTTTACTGCTCC
ATCTGGGCAGGAAGCTTGGAGCTACTACAGGTTATGATACCTTTGGCGAT
ATAGGCTCA
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