FC923158

Overview
NameFC923158
Unique NameFC923158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14393 contig Ccv1_Contig14393:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923158 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.673e-14
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  436 DQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVIL 627
            D  ++ GFE P+SP++SY+N+  G ED +++PP VPPHLQ TLL+ PA+  D    LP PQ+VIL
Sbjct:  187 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVIL 251

HSP 2 Score: 28.1054 bits (61), Expect = 5.673e-14
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = 3 
Query:  627 NHLYIENRDVPRSVVALGITHR 692
            NHLY++      SVVALG THR
Sbjct:  252 NHLYMQKGKSGPSVVALGSTHR 273
The following BLAST results are available for this feature:
BLAST of FC923158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KINB2_ARATH5.673e-1452.31SNF1-related protein kinase regulatory subunit bet... [more]
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Properties
Property NameValue
Genbank descriptionC31701G01EF StrClemenN Citrus clementina cDNA clone C31701G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923158 ID=FC923158; Name=FC923158; organism=Citrus clementina; type=EST; length=693bp
GATCGCCAAATGACAGCAAGGCCGGAGTTCGCTTGTTCGTGTCTTTGCTC
CCCCCTTTTCCAGGCTCCTCTCCTCTTCTCTCTCACTCTTGCTTGCAATT
TGCTCTGCTGCTCTGCTCTTCTCTGGTCACAATATATTATATTTTTCTTC
GAAATTCCTTTTTTTTCTCTGTTATTTCCCATCAGTTTCATTCTTTTCCA
TTTTTTTTTTAATTTTCATTCATGAGAATTTTTCAATTTCCAAAGATCTT
TATGTAGTAAGTAGCCAATTGTATTCTTCTCATTTCAGGTGGCGGTGAAA
GGTTGCGTCTTGGTCATTGAAGAATTTTAGTCTTAGCTCAGTCGGGGTCA
GTTGTGTTGCCTTCTTTCTCTTTTGATGATTTGGTGCCATTAGGATTTCT
CATCCAACATGAACCAATATGATGATGAAAATCATGATCAGGCAACAGTA
GTTGGATTTGAAGTCCCAAAGTCGCCCGATTCAAGTTACAACAATGTGTA
TCCTGGGAACGAGGATGAGGCACGCGACCCTCCTGCTGTGCCTCCTCATT
TGCAACACACATTGCTAAGCTATCCAGCAAGCAGGGATGCTTCTGGAATT
CTTCCTGCACCCCAGAATGTGATTCTAACCACCTTTACATTGAGAATCGA
GATGTGCCACGTTCTGTGGTGGCACTTGGAATTACTCATCGAT
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