FC923266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_XENTR (60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3 PE=2 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 9.652e-69 Identity = 118/208 (56.73%), Postives = 159/208 (76.44%), Query Frame = 3 Query: 111 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731 G++LCC+CGIP+ PN ANMCV+CLR +VDI+EG+ K V + C +C+ YLQPP TWI+ LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+Y+ Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++ G+DF++ ++ HA K VEF+ P R Sbjct: 13 GNILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCALESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYIVQSQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHAQKMVEFLQCTVPCR 219
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_XENLA (60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 9.652e-69 Identity = 119/208 (57.21%), Postives = 159/208 (76.44%), Query Frame = 3 Query: 111 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731 G++LCC+CGIP+ PN ANMCVACLR++VDI+EG+ K V + C +C+ YLQPP TWI+ LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++ G+DF++ ++ H K VEF+ P R Sbjct: 13 GNILCCQCGIPIPPNPANMCVACLRTQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCALESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQAQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHGQKMVEFLQCTVPCR 219
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_DANRE (60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.180e-66 Identity = 113/209 (54.07%), Postives = 158/209 (75.60%), Query Frame = 3 Query: 111 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVRS 734 G++LCC CG+P+ PN ANMCV+CLR++VDI+EG+ K V I C +C+ YLQPP +W++ LES+ELL C+K+LK ++++VRL++A F+WTEPHSKRIK+KL +QKEV+NGAIL+Q + VE+V Q MC+ C RV+A D W A VQ+RQ H++TF+YLEQLILKH +RI ++ +GIDF++ + HA K V+F+ P RS Sbjct: 13 GNILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCALESRELLALCLKKLKASMSKVRLIDAGFLWTEPHSKRIKIKLTIQKEVMNGAILQQVFTVEFVVQGQMCEDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVRIKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRS 220
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_BOVIN (60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 4.484e-66 Identity = 115/213 (53.99%), Postives = 157/213 (73.71%), Query Frame = 3 Query: 96 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731 V T G +LCC CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TW++ LES++LL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ P R Sbjct: 8 VKHTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVQCALESRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTR 219
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_MOUSE (60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 9.988e-66 Identity = 112/214 (52.34%), Postives = 160/214 (74.77%), Query Frame = 3 Query: 93 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731 ++ + G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP +W++ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ + P R Sbjct: 7 SIEHSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCR 219
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_HUMAN (60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 9.988e-66 Identity = 114/208 (54.81%), Postives = 156/208 (75.00%), Query Frame = 3 Query: 111 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731 G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ P R Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCR 219
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_DICDI (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 9.988e-66 Identity = 112/214 (52.34%), Postives = 157/214 (73.36%), Query Frame = 3 Query: 96 VPQTV-GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVRS 734 +PQ ++LCC CG+ + N +NMCV C++S+VDITEG+ K + I C C YLQPP W A+LES+ELLT C+KR+K LN+V+LV+A ++WTEPHSKR+KVKL +QKEV AIL+Q +++E++ Q CD C + +A D W + VQLRQ V H+RTF Y+EQLILKH+A ++ + I + G+DFFF NR+HA+KFVEF+ + PV++ Sbjct: 4 IPQVKQANILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWCRGCARYLQPPNHWAIAELESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSAILQQIFIIEFIVQGQQCDKCQKFEAK-DTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQTLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKT 216
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_PONAB (60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 2.906e-65 Identity = 114/208 (54.81%), Postives = 156/208 (75.00%), Query Frame = 3 Query: 111 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731 G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL VQKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF++LEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ P R Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYHLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCR 219
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_SCHPO (60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe GN=nmd3 PE=2 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 3.928e-62 Identity = 106/206 (51.46%), Postives = 143/206 (69.42%), Query Frame = 3 Query: 114 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731 ++LCC+CG+P PNAA MC+ C++ DIT G+ + ++HC EC+ Y+QPP W+ A LES+EL+ C+K+L+ LN+VRLV+A FIWTEPHS+RIKVKL VQKE IL+QS+ VE+ + C C+R P W A Q+RQ V H+RTF YLEQ+ILKH A + I + GIDF+FG R+HA+K VEF+ V P+R Sbjct: 21 TILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAPLESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEFYVNNTQCPDCARTY-TPHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMVEFLSAVVPIR 225
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_YEAST (60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae GN=NMD3 PE=1 SV=2) HSP 1 Score: 211.46 bits (537), Expect = 3.937e-54 Identity = 98/211 (46.45%), Postives = 140/211 (66.35%), Query Frame = 3 Query: 102 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731 Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP WI+A+LES+ELL C++RLK L VRLV+A FIWTEPHS+RI++KL VQ E + I++Q++ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I++ G+DFF+ ++HAVK ++F+ V P++ Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAELESRELLAICLRRLKGLTFVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIK 221 The following BLAST results are available for this feature:
BLAST of FC923266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923266 ID=FC923266; Name=FC923266; organism=Citrus clementina; type=EST; length=738bpback to top |