FC923266

Overview
NameFC923266
Unique NameFC923266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12308 contig Ccv1_Contig12308:80..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_XENTR (60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.652e-69
Identity = 118/208 (56.73%), Postives = 159/208 (76.44%), Query Frame = 3
Query:  111 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731
            G++LCC+CGIP+ PN ANMCV+CLR +VDI+EG+ K V +  C +C+ YLQPP TWI+  LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+Y+ Q  MCD C RV+A  D W A VQ+RQ V H++TF+YLEQ ILKH      +R+ ++  G+DF++ ++ HA K VEF+    P R
Sbjct:   13 GNILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCALESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYIVQSQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHAQKMVEFLQCTVPCR 219          
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_XENLA (60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.652e-69
Identity = 119/208 (57.21%), Postives = 159/208 (76.44%), Query Frame = 3
Query:  111 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731
            G++LCC+CGIP+ PN ANMCVACLR++VDI+EG+ K V +  C +C+ YLQPP TWI+  LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q  MCD C RV+A  D W A VQ+RQ V H++TF+YLEQ ILKH      +R+ ++  G+DF++ ++ H  K VEF+    P R
Sbjct:   13 GNILCCQCGIPIPPNPANMCVACLRTQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCALESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQAQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHGQKMVEFLQCTVPCR 219          
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_DANRE (60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.180e-66
Identity = 113/209 (54.07%), Postives = 158/209 (75.60%), Query Frame = 3
Query:  111 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVRS 734
            G++LCC CG+P+ PN ANMCV+CLR++VDI+EG+ K V I  C +C+ YLQPP +W++  LES+ELL  C+K+LK ++++VRL++A F+WTEPHSKRIK+KL +QKEV+NGAIL+Q + VE+V Q  MC+ C RV+A  D W A VQ+RQ   H++TF+YLEQLILKH      +RI ++ +GIDF++  + HA K V+F+    P RS
Sbjct:   13 GNILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCALESRELLALCLKKLKASMSKVRLIDAGFLWTEPHSKRIKIKLTIQKEVMNGAILQQVFTVEFVVQGQMCEDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVRIKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRS 220          
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_BOVIN (60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.484e-66
Identity = 115/213 (53.99%), Postives = 157/213 (73.71%), Query Frame = 3
Query:   96 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731
            V  T G +LCC CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C  Y QPP TW++  LES++LL  C+K++K  L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q  MC  C RV+A  D W A VQ+RQ   H++TF+YLEQLILK+      +RI ++  G+DF++ ++ HA K VEF+    P R
Sbjct:    8 VKHTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVQCALESRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTR 219          
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_MOUSE (60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.988e-66
Identity = 112/214 (52.34%), Postives = 160/214 (74.77%), Query Frame = 3
Query:   93 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731
            ++  + G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C  Y QPP +W++  LES+ELL  C+K++K  L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q  MC  C RV+A  D W A +Q+RQ   H++TF+YLEQLILK+      +RI ++  G+DF++ ++ HA K VEF+  + P R
Sbjct:    7 SIEHSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCR 219          
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_HUMAN (60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.988e-66
Identity = 114/208 (54.81%), Postives = 156/208 (75.00%), Query Frame = 3
Query:  111 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731
            G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C  Y QPP TWI+  LES+ELL  C+K++K  L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q  MC  C RV+A  D W A +Q+RQ   H++TF+YLEQLILK+      +RI ++  G+DF++ ++ HA K VEF+    P R
Sbjct:   13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCR 219          
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_DICDI (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.988e-66
Identity = 112/214 (52.34%), Postives = 157/214 (73.36%), Query Frame = 3
Query:   96 VPQTV-GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVRS 734
            +PQ    ++LCC CG+ +  N +NMCV C++S+VDITEG+ K + I  C  C  YLQPP  W  A+LES+ELLT C+KR+K LN+V+LV+A ++WTEPHSKR+KVKL +QKEV   AIL+Q +++E++ Q   CD C + +A  D W + VQLRQ V H+RTF Y+EQLILKH+A ++ + I +   G+DFFF NR+HA+KFVEF+  + PV++
Sbjct:    4 IPQVKQANILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWCRGCARYLQPPNHWAIAELESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSAILQQIFIIEFIVQGQQCDKCQKFEAK-DTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQTLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKT 216          
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_PONAB (60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.906e-65
Identity = 114/208 (54.81%), Postives = 156/208 (75.00%), Query Frame = 3
Query:  111 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731
            G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C  Y QPP TWI+  LES+ELL  C+K++K  L++VRLV+A F+WTEPHSKR+KVKL VQKEV+NGAIL+Q +VV+YV Q  MC  C RV+A  D W A +Q+RQ   H++TF++LEQLILK+      +RI ++  G+DF++ ++ HA K VEF+    P R
Sbjct:   13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYHLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCR 219          
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_SCHPO (60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe GN=nmd3 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.928e-62
Identity = 106/206 (51.46%), Postives = 143/206 (69.42%), Query Frame = 3
Query:  114 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731
            ++LCC+CG+P  PNAA MC+ C++   DIT G+ +   ++HC EC+ Y+QPP  W+ A LES+EL+  C+K+L+ LN+VRLV+A FIWTEPHS+RIKVKL VQKE     IL+QS+ VE+   +  C  C+R    P  W A  Q+RQ V H+RTF YLEQ+ILKH A    + I +   GIDF+FG R+HA+K VEF+  V P+R
Sbjct:   21 TILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAPLESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEFYVNNTQCPDCARTY-TPHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMVEFLSAVVPIR 225          
BLAST of FC923266 vs. ExPASy Swiss-Prot
Match: NMD3_YEAST (60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae GN=NMD3 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.937e-54
Identity = 98/211 (46.45%), Postives = 140/211 (66.35%), Query Frame = 3
Query:  102 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVG*VAPVR 731
            Q   ++LCC CG P+       MC  C++  VDIT+G+ +   IS C  C+ +LQPP  WI+A+LES+ELL  C++RLK L  VRLV+A FIWTEPHS+RI++KL VQ E +   I++Q++ VEY+     C  C+R     + W A VQ+RQ V H+RTF +LEQLILKH+A    I I++   G+DFF+  ++HAVK ++F+  V P++
Sbjct:   12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAELESRELLAICLRRLKGLTFVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIK 221          
The following BLAST results are available for this feature:
BLAST of FC923266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NMD3_XENTR9.652e-6956.7360S ribosomal export protein NMD3 OS=Xenopus tropi... [more]
NMD3_XENLA9.652e-6957.2160S ribosomal export protein NMD3 OS=Xenopus laevi... [more]
NMD3_DANRE1.180e-6654.0760S ribosomal export protein NMD3 OS=Danio rerio G... [more]
NMD3_BOVIN4.484e-6653.9960S ribosomal export protein NMD3 OS=Bos taurus GN... [more]
NMD3_MOUSE9.988e-6652.3460S ribosomal export protein NMD3 OS=Mus musculus ... [more]
NMD3_HUMAN9.988e-6654.8160S ribosomal export protein NMD3 OS=Homo sapiens ... [more]
NMD3_DICDI9.988e-6652.3460S ribosomal export protein NMD3 OS=Dictyostelium... [more]
NMD3_PONAB2.906e-6554.8160S ribosomal export protein NMD3 OS=Pongo abelii ... [more]
NMD3_SCHPO3.928e-6251.4660S ribosomal export protein nmd3 OS=Schizosacchar... [more]
NMD3_YEAST3.937e-5446.4560S ribosomal export protein NMD3 OS=Saccharomyces... [more]
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Properties
Property NameValue
Genbank descriptionC31702H01EF StrClemenN Citrus clementina cDNA clone C31702H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923266 ID=FC923266; Name=FC923266; organism=Citrus clementina; type=EST; length=738bp
GAAGTTTGCTTTTTGCCCTTGTTGTTTAAAAGCTCTCTTTGAATATCAAT
CAATTCAGGATCATCACCATGGCCCAAGATGCTGGTATGTTTACGGTTCC
GCAAACTGTCGGCAGCGTTTTGTGCTGCAAATGTGGTATTCCAATGGCAC
CTAATGCTGCCAATATGTGCGTAGCGTGTCTGCGCTCTGAAGTTGACATC
ACAGAAGGTTTACAGAAGCATGTGATCATTAGTCATTGCCCAGAGTGTGA
TTGCTACTTGCAACCGCCAAGAACATGGATTAAAGCTCAATTAGAATCAA
AGGAGCTCTTGACTTTTTGTGTAAAGAGACTCAAGAATTTGAATAGAGTT
CGTTTAGTAAATGCAGAATTCATTTGGACTGAGCCTCACTCAAAGAGGAT
CAAGGTCAAGCTGAAAGTGCAGAAGGAGGTTCTTAATGGGGCGATTCTTG
AGCAGTCATATGTTGTTGAGTATGTCCAGCAAGATCATATGTGTGATTCT
TGTTCGAGAGTTCAAGCCAACCCTGACCAGTGGGTTGCTGCCGTGCAGCT
GCGGCAGCATGTTACTCACAGGCGAACCTTCTTTTATTTAGAGCAACTGA
TTCTAAAGCATGATGCTGCTGCTCGGGCTATTAGAATCACGCAAATGGAT
CAAGGAATTGATTTCTTCTTTGGTAATAGAAGCCATGCTGTGAAATTTGT
TGAATTTGTGGGGTAGGTTGCTCCAGTAAGAAGCGCCA
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