FC923268

Overview
NameFC923268
Unique NameFC923268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14427 contig Ccv1_Contig14427:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923268 vs. ExPASy Swiss-Prot
Match: SERB_ARATH (Phosphoserine phosphatase, chloroplastic OS=Arabidopsis thaliana GN=PSP PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.836e-62
Identity = 121/190 (63.68%), Postives = 140/190 (73.68%), Query Frame = 1
Query:  139 MEGLVRSQISPIGAHYKQQHSVFIPKFSLKLRTNLCRARVGMMKHSKSFNSVAASVQPLEASALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIAS 708
            ME L  S++ P+    ++  S+F     L+LR   CR  V +M H K    V ASVQP E S LG   N +PSKE+L LWR+ +AVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLS+V+++L+KRPPRLSPGI+E            YLISGGFR MINP+AS
Sbjct:    1 MEALTTSRVVPVQVPCRKLSSLFANFSCLELRRYPCRGLVSIMNHPKLLRPVTASVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDVYLISGGFRQMINPVAS 190          
BLAST of FC923268 vs. ExPASy Swiss-Prot
Match: SERB_RAT (Phosphoserine phosphatase OS=Rattus norvegicus GN=Psph PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 61/116 (52.59%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  361 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIAS 708
            E+ +L+ +ADAVCFDVDSTV  +EGIDELA+FCG   AV+E T RAMGG++PF++AL  RL+L +PS  QVQ  L + PP L+PGI E            +LISGGFR ++  +A+
Sbjct:    6 ELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMGGALPFKDALTERLALIQPSRDQVQRLLAEHPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAA 121          
BLAST of FC923268 vs. ExPASy Swiss-Prot
Match: SERB_MOUSE (Phosphoserine phosphatase OS=Mus musculus GN=Psph PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 61/116 (52.59%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  361 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIAS 708
            E+ +L+ +ADAVCFDVDSTV  +EGIDELA+FCG   AV+E T RAMGG++PF++AL  RL+L +PS  QVQ  L + PP L+PGI E            +LISGGFR ++  +A+
Sbjct:    6 ELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMGGALPFKDALTQRLALIQPSRDQVQRLLAEHPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAA 121          
BLAST of FC923268 vs. ExPASy Swiss-Prot
Match: SERB_BOVIN (Phosphoserine phosphatase OS=Bos taurus GN=PSPH PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  361 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIAS 708
            E+  L+ +ADAVCFDVDSTV  +EGIDELA+FCG   AV+E T +AMGG+VPF+ AL  RL+L +PS  QVQ  L + PP L+PGI E            +LISGGFR ++  +AS
Sbjct:    6 ELRNLFCSADAVCFDVDSTVIQEEGIDELAKFCGVEDAVSEMTRQAMGGAVPFKAALTQRLALIQPSREQVQRLLAEHPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAS 121          
BLAST of FC923268 vs. ExPASy Swiss-Prot
Match: SERB_PONAB (Phosphoserine phosphatase OS=Pongo abelii GN=PSPH PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 1
Query:  361 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIAS 708
            E+ +L+ +ADAVCFDVDSTV  +EGIDELA+ CG   AV+E T RAMGG+VPF+ AL  RL+L +PS  QVQ  + ++PP L+PGI E            +LISGGFR ++  +AS
Sbjct:    6 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAS 121          
BLAST of FC923268 vs. ExPASy Swiss-Prot
Match: SERB_HUMAN (Phosphoserine phosphatase OS=Homo sapiens GN=PSPH PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 1
Query:  361 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIAS 708
            E+ +L+ +ADAVCFDVDSTV  +EGIDELA+ CG   AV+E T RAMGG+VPF+ AL  RL+L +PS  QVQ  + ++PP L+PGI E            +LISGGFR ++  +AS
Sbjct:    6 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAS 121          
BLAST of FC923268 vs. ExPASy Swiss-Prot
Match: SERB_DROME (Phosphoserine phosphatase OS=Drosophila melanogaster GN=aay PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = 1
Query:  319 ASALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIAS 708
            ASA+   +    + +V+Q    +  VCFDVDSTV  +EGIDELAE+CG G  VA  T  AMGG++ F++AL  RL++ +P+  QV+DF+++RP  LS  +              YLISGGF  +I P+A+
Sbjct:   42 ASAITPPKQPQLAAKVIQ---QSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAEGKQVYLISGGFDCLIAPVAN 168          
The following BLAST results are available for this feature:
BLAST of FC923268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SERB_ARATH2.836e-6263.68Phosphoserine phosphatase, chloroplastic OS=Arabid... [more]
SERB_RAT5.052e-2752.59Phosphoserine phosphatase OS=Rattus norvegicus GN=... [more]
SERB_MOUSE5.052e-2752.59Phosphoserine phosphatase OS=Mus musculus GN=Psph ... [more]
SERB_BOVIN6.598e-2753.45Phosphoserine phosphatase OS=Bos taurus GN=PSPH PE... [more]
SERB_PONAB1.125e-2652.59Phosphoserine phosphatase OS=Pongo abelii GN=PSPH ... [more]
SERB_HUMAN1.125e-2652.59Phosphoserine phosphatase OS=Homo sapiens GN=PSPH ... [more]
SERB_DROME2.869e-2243.08Phosphoserine phosphatase OS=Drosophila melanogast... [more]
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Properties
Property NameValue
Genbank descriptionC31702H04EF StrClemenN Citrus clementina cDNA clone C31702H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923268 ID=FC923268; Name=FC923268; organism=Citrus clementina; type=EST; length=710bp
GATATTTTTTATGATTGGCAGTTGCGGGAAAAAGAAACAGAACTGAGTGG
GCAGACACTGAACATATCCCATCAGCACCCAACAACAGTGCGATCCAAAA
GCTTTAATTAACTTTCAAAAATTAACGTTATTAATTTGATGGAGGGGTTG
GTGAGATCTCAAATCTCTCCAATTGGTGCTCATTACAAACAACAACACTC
TGTTTTTATTCCGAAATTTTCATTGAAATTGAGGACAAATTTATGTAGAG
CTCGAGTTGGGATGATGAAGCATTCTAAATCATTCAATTCCGTTGCTGCT
TCAGTGCAACCATTAGAAGCCTCAGCATTGGGCCGTTCTGAGAACACACT
GCCCTCCAAAGAGGTTCTTCAGCTGTGGAGAACTGCTGATGCGGTGTGCT
TCGATGTTGATAGCACGGTATGTGTAGATGAGGGCATTGATGAACTTGCG
GAATTTTGTGGAGCTGGAAAGGCTGTTGCGGAATGGACAGCCAGGGCAAT
GGGGGGGTCTGTTCCGTTCGAGGAGGCCTTGGCTGCCAGACTTTCCTTGT
TCAAACCTTCATTGTCCCAAGTCCAGGATTTTCTTGAGAAGAGACCCCCT
AGGCTCTCACCTGGCATAGATGAGTTGGTCAAGAAGCTGAAGGCTAACAA
TAAGAATGTTTATCTGATCTCTGGGGGCTTCCGTCATATGATCAATCCTA
TTGCATCAGT
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