FC923282

Overview
NameFC923282
Unique NameFC923282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.891e-36
Identity = 74/93 (79.57%), Postives = 86/93 (92.47%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV++IIFSP+GKL EFASS+MQ+TI+RYL+HTKD  +    +E+NMQHLK+E
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYE 93          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.159e-29
Identity = 65/91 (71.43%), Postives = 78/91 (85.71%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLK 661
            MVRGKTQM+RIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRGKL EFAS+S Q+TIERY  +TK+     +  +Q+++ +K
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKENIGN-KTVQQDIEQVK 90          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.021e-28
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQ 652
            MVRGKT+M+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA++IFSPR KL EF+SSS+  TIERY +  K+  N  +  + + Q
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKEIGNNHKRNDNSQQ 88          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.625e-27
Identity = 63/94 (67.02%), Postives = 81/94 (86.17%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS-SMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            MVRG+T+++RIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRG+L EFAS+ S+Q+TI+RY  +TKD  N  +  +Q++Q +K +
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNN-KTIQQDIQQVKDD 93          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.625e-27
Identity = 63/94 (67.02%), Postives = 81/94 (86.17%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS-SMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            MVRG+T+++RIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRG+L EFAS+ S+Q+TI+RY  +TKD  N  +  +Q++Q +K +
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNN-KTIQQDIQQVKDD 93          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.477e-27
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEF-ASSSMQETIERYLKHTKDTRNKAQPTEQNMQ 652
            MVRGKT+M+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+IIFSPRGKL EF +SSS+ +T+ERY K  +D  +  +  + + Q
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRNDNSQQ 89          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26
Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            M RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVA+I+FS RG+L E+A++S++ T+ERY K   DT N     E N QH + E
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQE 93          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.457e-25
Identity = 55/91 (60.44%), Postives = 73/91 (80.22%), Query Frame = 2
Query:  395 RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            RGK +++RIEN T+RQVTF KRR+GLLKKA+ELSVLCDAEVA+++FS RG+L E++++S++ETIERY K   DT N +   E N QH + E
Sbjct:   45 RGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQE 135          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.190e-25
Identity = 56/94 (59.57%), Postives = 74/94 (78.72%), Query Frame = 2
Query:  386 KMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            K+ RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVA+I+FS RG+L E+A++S++ TIERY K   D+ N    +E N Q+ + E
Sbjct:   16 KLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQE 109          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.190e-25
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  386 KMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            K+ RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVA++IFS RG+L E+A++S++ TIERY K   D  N    TE N Q+ + E
Sbjct:   15 KLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQE 108          
The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
SOC1_ARATH6.891e-3679.57MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD50_ORYSJ8.159e-2971.43MADS-box transcription factor 50 OS=Oryza sativa s... [more]
AGL19_ARATH9.021e-2870.45Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MAD56_ORYSJ2.625e-2767.02MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSI2.625e-2767.02MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AGL14_ARATH4.477e-2770.79Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MADS3_ORYSJ4.950e-2661.29MADS-box transcription factor 3 OS=Oryza sativa su... [more]
MAD58_ORYSJ2.457e-2560.44MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AG_TOBAC4.190e-2559.57Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AGL1_ARATH4.190e-2560.64Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC31703B03EF StrClemenN Citrus clementina cDNA clone C31703B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bp
GATATTTTTTTCCTTTTTTATGTAAATTTTATTTTTCTTTCGGGTCTGTG
TTTGTAGGTTTACCAAAACAAGCAAAACATGAGGCTTCAAATGTATTTGA
TACTAAAAATATAATACTCTTTTAATTTCTGTTTCTTTAAATAGGTGCTG
TTTGAGGATAGATCAATCCCCAGGGAATTAAGGAAAGGTGATTTTCGGTT
GGTGCTTTGCTCTCGCTCCCTCTGTGGTGACTAAATCAAAAATTAACAAT
CAGGAAAGGAACCTAGCTAGTTTAGTTACCTTTCTCTGCAATATCATCGT
TGCTCAAAAACCGCAGATATTTTGTCAGCTTCTTCCCATTTTGGTTTCTT
CTTTCTCTTTGGATTTTGCCCATTTGGTCTGAATTAAGATGGTGAGAGGC
AAAACTCAAATGAGGCGCATAGAGAATGCTACAAGCAGGCAAGTCACCTT
CTCCAAAAGAAGAAATGGTTTGCTAAAGAAGGCCTTTGAGCTTTCAGTTC
TCTGTGATGCTGAGGTTGCCGTTATTATCTTCTCTCCTAGAGGCAAGCTC
TCTGAATTTGCAAGTTCCAGCATGCAGGAGACAATAGAACGGTATCTGAA
GCATACAAAAGACACTCGAAACAAAGCACAGCCAACGGAACAAAACATGC
AGCATCTGAAGCATGAAGC
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