FC923283

Overview
NameFC923283
Unique NameFC923283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923283_ssr257 microsatellite FC923283_ssr257:257..268. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14429 contig Ccv1_Contig14429:1..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923283 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  369 SSQTDWLSFSSAT*LINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLR 659
            S+  DW  F     LINHGV E+VIEKMK D E+FF+LP +EK A  QLPN +EGYGQAFV S++QKLDW DM FL+T+P   R    WPT PTS R
Sbjct:   74 SACLDWGFFQ----LINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFR 166          

HSP 2 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  104 GGSLPVENVQALASNS-KEIPSRYIRPELD-DEQVLADGSLHIPVIDMSKLQDDDD--DELAEFHLACKDSGFLQV 319
            GGSLPVENVQ LA    K +P+RY+RPEL+ D+ V  D SL IPVID+S+L D     DELA+FH AC D GF Q+
Sbjct:    9 GGSLPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSLEIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQL 84          
BLAST of FC923283 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.762e-25
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  411 LINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLR 659
            L+NHG+    ++K+K++I++FF LP+EEK    Q P+ IEG+GQAFVVS+DQKLDW D+ F   QP  +R   L+P +P   R
Sbjct:   86 LVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFR 168          

HSP 2 Score: 39.2762 bits (90), Expect = 7.762e-25
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 2
Query:  110 SLPVENVQALASNSK--EIPSRYIRPELDDEQVLADGS--LHIPVIDMSKLQDDD--DDELAEFHLACKDSGFLQV 319
            S+ V +VQ +        +P RY+R + D  +V  D    + IP+IDM +L      D E+ +   ACK+ GF Q+
Sbjct:   11 SILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQL 86          
BLAST of FC923283 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  348 KLYEIIESSQTDWLSFSSAT*LINHGVPEKVIEKMKTDIEEFFKLPLEEKMACA--QLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIP 647
            K +E ++ + TDW        LINHG+PE++I+++K   +EFF+LP+EEK A A  Q   +++GYG     +   +L+W D  F    P +    S+WPT P
Sbjct:   71 KCHEELKKAATDW----GVMHLINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEWEDYFFHCVYPEHKTDLSIWPTKP 168          
BLAST of FC923283 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.184e-11
Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 3
Query:  411 LINHGVPEKVIEKMKTDIEEFFKLPLEEKMACA--QLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPT 650
            L+NHG+ + +I ++K   E FF LP+EEK   A  Q    I GYG     +   +L+W D  F L  P + R  ++WP  P+
Sbjct:   88 LVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPS 169          

HSP 2 Score: 29.261 bits (64), Expect = 2.184e-11
Identity = 17/66 (25.76%), Postives = 33/66 (50.00%), Query Frame = 2
Query:  128 VQALASNS-KEIPSRYIRPELD-------DEQVLADGSLHIPVIDMSKLQDDDDDELAEFHLACKD 301
            V++L+S+  + IP  YIRP+ +        E+   D    +P ID+  ++ +D+    E    C++
Sbjct:    9 VESLSSSGIQSIPKEYIRPQEELTSIGNVFEEEKKDEGPQVPTIDLKDIESEDEVVRREIRERCRE 74          
The following BLAST results are available for this feature:
BLAST of FC923283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NCS1_COPJA6.643e-2659.79S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
SRG1_ARATH7.762e-2549.40Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
LDOX_PERFR6.449e-1337.25Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
LDOX_VITVI2.184e-1136.59Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
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Properties
Property NameValue
Genbank descriptionC31703B04EF StrClemenN Citrus clementina cDNA clone C31703B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923283 ID=FC923283; Name=FC923283; organism=Citrus clementina; type=EST; length=679bp
GAGAAAATACAATATATGTGCGTGAGTACATAAAAGCTAGGAGAATAATA
CCCCAAAAGAGAGTTGCGGAATGGAAACTGCAGTTGACAAGAAAAATGTC
TACGGCGGTTCTTTACCTGTAGAAAATGTTCAAGCTCTTGCATCTAATTC
CAAGGAAATCCCATCCCGGTACATCCGACCAGAACTTGATGATGAGCAAG
TTCTCGCTGATGGATCACTTCATATTCCAGTGATTGATATGAGCAAGCTT
CAGGACGATGATGATGATGAATTGGCAGAGTTCCATTTGGCTTGCAAAGA
CTCGGGCTTCCTCCAGGTAAGACAATTTTGTTTATCCATGTTCAACGAAA
CTCTATGAAATAATCGAATCTAGCCAAACTGATTGGTTATCTTTTTCGAG
TGCTACATAGTTGATCAATCACGGGGTACCAGAAAAAGTAATTGAGAAGA
TGAAAACTGACATTGAGGAATTCTTTAAGCTGCCATTAGAGGAGAAGATG
GCTTGCGCACAGCTGCCAAATAGCATTGAAGGTTATGGGCAAGCTTTCGT
TGTCTCCAAGGATCAAAAGCTTGATTGGGGAGACATGCTTTTTCTTCTTA
CTCAACCTGCCAATATTAGAACCACGAGTCTCTGGCCTACCATCCCTACT
TCTTTAAGGTAAATCATAATTTTGTTTTT
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