FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15361 contig Ccv1_Contig15361:240..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.257e-107
Identity = 187/229 (81.66%), Postives = 209/229 (91.27%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITVSCVPMDD RASD+GLMKID +G IIQFAEKPKGP LK MQ DT++LGLS  +A  FPYIASMGVY+F+TDVLLNLL+S+YP  NDFGSEIIP++VKDHNVQA+LFNDYWEDIGT+KSFFDANLALT+QP KF+F DP+TPFYTSARFLPPTKVD+ +IVDAIISHGCFLREC++QHSIVGVRSRL+ GVEF+DTMMMGADYYQTE EIASLLAE KVPIG G N
Sbjct:  234 ADITVSCVPMDDGRASDFGLMKIDETGAIIQFAEKPKGPALKAMQVDTSILGLSEQEASNFPYIASMGVYVFKTDVLLNLLKSAYPSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDIGTVKSFFDANLALTKQPPKFDFNDPKTPFYTSARFLPPTKVDKSRIVDAIISHGCFLRECNIQHSIVGVRSRLDYGVEFKDTMMMGADYYQTECEIASLLAEGKVPIGVGPN 462          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL1_BETVU (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.144e-107
Identity = 187/229 (81.66%), Postives = 208/229 (90.83%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITVSC+PMDDSRASDYGLMKID +G+I+ FAEKPKG DL  MQ DTT+LGLS  +A+  PYIASMGVY+FRTDVL+ LL   YP SNDFGSEIIP++V + NVQA+LFNDYWEDIGTIKSFFD+NLALT+QP KFEFYDP+TPFYTSARFLPPTKVDRCKIVD+I+SHGCFL+E S+QHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAE KVP+G GQN
Sbjct:  237 ADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGLSDLEAMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFNDYWEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPFYTSARFLPPTKVDRCKIVDSIVSHGCFLQESSIQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQN 465          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL2_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2)

HSP 1 Score: 382.104 bits (980), Expect = 1.536e-105
Identity = 182/229 (79.48%), Postives = 209/229 (91.27%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITVSC+PMD+SRASD+GL+KID+SG+IIQF+EKPKG DLK MQ DT++LGL   +A + PYIASMGVY+FR +VLL LLRSSYP SNDFGSEIIP +V +HNVQAFLFNDYWEDIGTI SFFDANLALTEQP KF+FYD +TPF+TS RFLPPTKVD+C+I+D+I+SHGCFLRECSVQHSIVG+RSRLESGVE QDTMMMGAD+YQTE+EIASLLAE KVP+G GQN
Sbjct:  233 ADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQN 461          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL1_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 2.806e-99
Identity = 172/229 (75.11%), Postives = 202/229 (88.21%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADIT+SC P +DSRASD+GL+KID  G+++QFAEKPKG DLK MQ DTTL+GLS  DA K PYIASMGVY+F+TDVLL LL+ SYP SNDFGSEIIPA++ D+NVQA++F DYWEDIGTIKSF++A+LALT++  +F+FYDP+TPFYTS RFLPPTK+D CKI DAIISHGCFLR+CSV+HSIVG RSRL+ GVE +DT MMGADYYQTESEIASLLAE KVPIG G+N
Sbjct:  185 ADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQDAKKSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGTIKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCSVEHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGEN 413          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.153e-95
Identity = 161/229 (70.31%), Postives = 196/229 (85.59%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADIT+SC P+ +SRAS++GL+KIDR G++I F+EKP G DLK MQ DTT+LGLS  +A   PYIASMGVY F+T+ LLNLL   YP SNDFGSE+IPA+++DH+VQ ++F DYWEDIGTIK+F++ANLAL E+  KFEFYDP TPFYTS RFLPPTK ++C++VD+IISHGCFLRECSVQ SI+G RSRL+ GVE QDT+M+GADYYQTESEIASLLAE KVPIG G++
Sbjct:  238 ADITLSCAPVSESRASNFGLVKIDRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTRQYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPETPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLGADYYQTESEIASLLAEGKVPIGIGKD 466          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL3_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 3.323e-92
Identity = 158/230 (68.70%), Postives = 193/230 (83.91%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            KADIT+SC P+D+SRAS+YGL+ IDRSG+++ F+EKP G DLK MQ DTT+ GLS  +A K PYIASMGVY F+T+ LL LL   YP SNDFGSEIIPA++KDHNVQ +++ DYWEDIGTIKSF++AN+AL E+  KFEFYD  TPFYTS RFLPPTK ++C+IV+++ISHGCFL ECS+Q SI+G RSRL+ GVE QDT+M+GAD YQTESEIASLLAE  VPIG G++
Sbjct:  235 KADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRD 464          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL1_HORVU (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 333.569 bits (854), Expect = 6.266e-91
Identity = 152/229 (66.38%), Postives = 193/229 (84.28%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADIT+SC P+ +SRAS+YGL+K D SG++IQF+EKPKG DL+ M+ DT+ L  ++ D  K+PYIASMGVY+F+ DVLLNLL+S Y   +DFGSEI+P ++ DHNVQA++F DYWEDIGTI+SFFDAN+AL EQP KFEFYDP+TPF+TS R+LPPTK D+C+I +AIISHGCFLREC ++HSI+GVRSRL SG E ++ MMMGAD Y+TE EI+ L++E KVPIG G+N
Sbjct:  238 ADITLSCAPVGESRASEYGLVKFDSSGRVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGEN 466          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL2_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 8.184e-91
Identity = 151/229 (65.94%), Postives = 193/229 (84.28%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADIT+SC P+ +SRAS+YGL+K D SG+++QF+EKPKG DL+ M+ DT+ L  ++ D  K+PYIASMGVY+F+ DVLLNLL+S Y   +DFGSEI+P ++ DHNVQA++F DYWEDIGTI+SFFDAN+AL EQP KFEFYDP+TPF+TS R+LPPTK D+C+I +AIISHGCFLREC ++HSI+GVRSRL SG E ++ MMMGAD Y+TE EI+ L++E KVPIG G+N
Sbjct:  237 ADITLSCAPVGESRASEYGLVKFDSSGRVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGEN 465          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL2_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Zea mays GN=AGP2 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.464e-87
Identity = 152/230 (66.09%), Postives = 191/230 (83.04%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDA-VKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADIT+SC P+ +SRASDYGL+K D SG++IQF+EKPKG  L+ M+ DT+ L  +      ++PYIASMGVY+F+ DVLL+LL+S Y   +DFGSEI+P ++ +HNVQA++F DYWEDIGTI+SFFDAN+AL EQP KFEFYDP+TPF+TS R+LPPTK D+C+I DAIISHGCFLREC+++HSIVGV SRL SG E ++TMMMGAD Y+TE EI+ LLAE KVPIG G+N
Sbjct:  234 ADITLSCAPVGESRASDYGLVKFDSSGRVIQFSEKPKGAALEEMKVDTSFLNFATCTLPAEYPYIASMGVYVFKRDVLLDLLKSRYAELHDFGSEILPKALHEHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKDAIISHGCFLRECAIEHSIVGVPSRLNSGCELKNTMMMGADLYETEDEISRLLAEGKVPIGVGEN 463          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL1_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3)

HSP 1 Score: 318.161 bits (814), Expect = 2.724e-86
Identity = 148/229 (64.63%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADI++SC+P+DD RASD+GLMKID  G++I F+EKPKG DLK M  DTT+LGLS  +A K PYIASMGVY+F+ ++LLNLLR  +P +NDFGSEIIP S K+  V A+LFNDYWEDIGTI+SFF+ANLALTE P  F FYD   P YTS R LPP+K+D  K++D+IISHG FL  C ++HSIVG+RSR+ S V+ +DT+M+GADYY+TE+E+A+LLAE  VPIG G+N
Sbjct:  237 ADISISCIPIDDRRASDFGLMKIDDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGADYYETEAEVAALLAEGNVPIGIGEN 465          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGL2_SOLTU1.257e-10781.66Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_BETVU2.144e-10781.66Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_ARATH1.536e-10579.48Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_SOLTU2.806e-9975.11Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL4_ARATH7.153e-9570.31Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL3_ARATH3.323e-9268.70Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_HORVU6.266e-9166.38Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_WHEAT8.184e-9165.94Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_MAIZE2.464e-8766.09Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_ARATH2.724e-8664.63Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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