FC923287

Overview
NameFC923287
Unique NameFC923287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_ARATH (Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 7.742e-89
Identity = 154/178 (86.52%), Postives = 171/178 (96.07%), Query Frame = 1
Query:  145 MRGGSLWQLGQSITRRLAQADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI 678
            MRGGSLWQLGQSITRRLAQ+DKK ++RR+FAS+A+ LKKTAL+DFHVA+GGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDV+HMCGLSLKGKDCVPFLE LV+ADVAGLAPGTG+LTVFTNE GGAIDDSVITKV D+HIYLVVNAGCRDKDLAHIE HMK+F +KGGDVSWHI
Sbjct:    1 MRGGSLWQLGQSITRRLAQSDKKVVSRRYFASEAD-LKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVAHMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDEHIYLVVNAGCRDKDLAHIEEHMKAFKSKGGDVSWHI 177          

HSP 2 Score: 24.6386 bits (52), Expect = 7.742e-89
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  678 HDERSLLAFQAP 713
            HDERSLLA Q P
Sbjct:  178 HDERSLLALQGP 189          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_MESCR (Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 4.976e-88
Identity = 152/178 (85.39%), Postives = 168/178 (94.38%), Query Frame = 1
Query:  145 MRGGSLWQLGQSITRRLAQADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI 678
            MRGG LWQLGQS+TRRLAQA+KK IARR FAS+A+ LKKTAL+DFHVANGGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDV+HMCGLSLKGKDC+PFLEKLV+ D+AGLAPGTGTL+V TNE GGAIDD+VITKV DDHIYLVVNAGCR+KDLAHIE HMK+F AKGGDVSWHI
Sbjct:    1 MRGGGLWQLGQSVTRRLAQAEKKVIARRCFASEAD-LKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVAHMCGLSLKGKDCIPFLEKLVVGDIAGLAPGTGTLSVLTNEKGGAIDDTVITKVTDDHIYLVVNAGCREKDLAHIEEHMKAFKAKGGDVSWHI 177          

HSP 2 Score: 24.6386 bits (52), Expect = 4.976e-88
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  678 HDERSLLAFQAP 713
            HDERSLLA Q P
Sbjct:  178 HDERSLLALQGP 189          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FLAPR (Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 8.468e-88
Identity = 158/178 (88.76%), Postives = 168/178 (94.38%), Query Frame = 1
Query:  145 MRGGSLWQLGQSITRRLAQADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI 678
            MRGG LWQLGQSITRRL Q+DKKTIARR +AS+A+ LKKT L+DFHVANGGKMVPFAGWSMPIQYKDSIMEST+NCR+NGSLFDVSHMCGLSLKGKDCVPFLEKLV+ADVAGL PGTG+LTVFTNE GGAIDDSVITKV DDHIYLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHI
Sbjct:    1 MRGG-LWQLGQSITRRLGQSDKKTIARRCYASEAD-LKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSHMCGLSLKGKDCVPFLEKLVVADVAGLRPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHI 176          

HSP 2 Score: 22.3274 bits (46), Expect = 8.468e-88
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  678 HDERSLLAFQAP 713
            +DERSLLA Q P
Sbjct:  177 YDERSLLALQGP 188          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FLATR (Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.880e-87
Identity = 156/178 (87.64%), Postives = 167/178 (93.82%), Query Frame = 1
Query:  145 MRGGSLWQLGQSITRRLAQADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI 678
            MRGG LWQ+GQSITRRL Q+DKKTI RR +AS+A+ LKKT L+DFHVANGGKMVPFAGWSMPIQYKDSIMEST+NCR+NGSLFDVSHMCGLSLKGKDCV FLEKLV+ADVAGLAPGTG+LTVFTNE GGAIDDSVITKV DDHIYLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHI
Sbjct:    1 MRGG-LWQVGQSITRRLGQSDKKTIVRRWYASEAD-LKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSHMCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEQHMKAFKAKGGDVSWHI 176          

HSP 2 Score: 24.6386 bits (52), Expect = 1.880e-87
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  678 HDERSLLAFQAP 713
            HDERSLLA Q P
Sbjct:  177 HDERSLLALQGP 188          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_SOLTU (Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.880e-87
Identity = 157/178 (88.20%), Postives = 167/178 (93.82%), Query Frame = 1
Query:  145 MRGGSLWQLGQSITRRLAQADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI 678
            MRGG LWQLGQSITRRLAQADKKTI RR FASDA+ LKKT L+DFHV NGGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDVSHMCGLSLKGKD +PFLEKLVIADVAGLAPGTG+LTVFTNE GGAIDDSV+TKV +DHIYLVVNAGCRDKDLAHIE HMKSF +KGGDVSWHI
Sbjct:    1 MRGG-LWQLGQSITRRLAQADKKTIGRRCFASDAD-LKKTVLYDFHVVNGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVSHMCGLSLKGKDTIPFLEKLVIADVAGLAPGTGSLTVFTNEKGGAIDDSVVTKVTNDHIYLVVNAGCRDKDLAHIEEHMKSFKSKGGDVSWHI 176          

HSP 2 Score: 24.6386 bits (52), Expect = 1.880e-87
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  678 HDERSLLAFQAP 713
            HDERSLLA Q P
Sbjct:  177 HDERSLLALQGP 188          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FLAAN (Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.562e-86
Identity = 155/178 (87.08%), Postives = 167/178 (93.82%), Query Frame = 1
Query:  145 MRGGSLWQLGQSITRRLAQADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI 678
            MRGG LWQLGQSITRRL Q+DKKTI RR +AS+A+ LKKT L+DFHVA+GGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDVSHMCGLSLKGKDCV FLEKLV+ADVAGLAPGTG+LTVFTNE GGAIDDSVITKV DDHIYLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHI
Sbjct:    1 MRGG-LWQLGQSITRRLGQSDKKTIVRRCYASEAD-LKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVSHMCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHI 176          

HSP 2 Score: 22.3274 bits (46), Expect = 4.562e-86
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  678 HDERSLLAFQAP 713
            +DERSLLA Q P
Sbjct:  177 YDERSLLALQGP 188          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_PEA (Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 5.962e-83
Identity = 154/179 (86.03%), Postives = 163/179 (91.06%), Query Frame = 1
Query:  145 MRGGSLWQLGQSITRRLAQA-DKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI 678
            MRGG LWQLGQSITRRLA   DKK +ARR FA+++E LKKT L+DFHVA+GGKMVPFAGWSMPIQYKDSIM+STLNCRQNGSLFDVSHMCGLSLKGKD V FLEKLVIADVA LA GTGTLTVFTNE GGAIDDSVITKV DDH+YLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHI
Sbjct:    1 MRGG-LWQLGQSITRRLANGGDKKAVARRCFATESE-LKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVSHMCGLSLKGKDVVSFLEKLVIADVAALAHGTGTLTVFTNEKGGAIDDSVITKVTDDHLYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHI 177          

HSP 2 Score: 24.6386 bits (52), Expect = 5.962e-83
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  678 HDERSLLAFQAP 713
            HDERSLLA Q P
Sbjct:  178 HDERSLLALQGP 189          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_CHICK (Aminomethyltransferase, mitochondrial OS=Gallus gallus GN=AMT PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.173e-39
Identity = 79/158 (50.00%), Postives = 104/158 (65.82%), Query Frame = 1
Query:  208 KKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIT 681
            +  +ARRH +S  E LK+T L   H A GG+MVPFAGWS+P+QY    +ES L+ R++ SLFDVSHM    + G+D V FLE LV+ D+A L PG GTLT+ TNE G  +DD ++T   +DH+Y+V NAGC DKD A +E       A GGDV   ++
Sbjct:    7 RAALARRHLSSAPEGLKQTPLDALHRARGGRMVPFAGWSLPVQYGRGHLESHLHTRRHCSLFDVSHMLQTRVYGRDRVRFLESLVVGDIAELRPGQGTLTLLTNERGDIVDDLIVTNTAEDHLYVVSNAGCADKDRAVMEGRAAELRAAGGDVHLEVS 164          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_MOUSE (Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.438e-38
Identity = 77/167 (46.11%), Postives = 111/167 (66.47%), Query Frame = 1
Query:  217 IARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHITMRDLFLPFRPLA 717
            +  R  +S  + L++T L+DFH+A+GGKMV FAGWS+P+QY+DS ++S L+ R++ SLFDVSHM    + G D V  LE +V+ D+A L P  GTL++FTNE GG +DD +++   + H+Y+V NAGCRDKDLA ++  +K F  +G DV   +    L     P A
Sbjct:   21 VQSRPLSSVQDVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKIFGCDRVKLLESVVVGDIAELRPNQGTLSLFTNEAGGILDDLIVSNTSEGHLYVVSNAGCRDKDLALMQDKVKEFQNRGLDVGLEVVENALLALQGPTA 187          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_BOVIN (Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 71/142 (50.00%), Postives = 100/142 (70.42%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHI 678
            L +T L+DFH+A+GGKMV FAGWS+P+QY+DS + S L+ RQ+ SLFDVSHM    + G D V  +E LV+ D+A L P  GTL++FTNE GG +DD ++T   + H+Y+V NAGCR+KDL  ++  ++    KG DV+  +
Sbjct:   27 LHRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVNSHLHTRQHCSLFDVSHMLQTKIFGCDRVKLMESLVVGDIAELKPNQGTLSLFTNEAGGILDDLIVTSASEGHLYVVSNAGCREKDLTLMQDKVRELQNKGSDVALEV 168          
The following BLAST results are available for this feature:
BLAST of FC923287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_ARATH7.742e-8986.52Aminomethyltransferase, mitochondrial OS=Arabidops... [more]
GCST_MESCR4.976e-8885.39Aminomethyltransferase, mitochondrial OS=Mesembrya... [more]
GCST_FLAPR8.468e-8888.76Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLATR1.880e-8787.64Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_SOLTU1.880e-8788.20Aminomethyltransferase, mitochondrial OS=Solanum t... [more]
GCST_FLAAN4.562e-8687.08Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_PEA5.962e-8386.03Aminomethyltransferase, mitochondrial OS=Pisum sat... [more]
GCST_CHICK1.173e-3950.00Aminomethyltransferase, mitochondrial OS=Gallus ga... [more]
GCST_MOUSE6.438e-3846.11Aminomethyltransferase, mitochondrial OS=Mus muscu... [more]
GCST_BOVIN9.296e-3750.00Aminomethyltransferase, mitochondrial OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionC31703B09EF StrClemenN Citrus clementina cDNA clone C31703B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923287 ID=FC923287; Name=FC923287; organism=Citrus clementina; type=EST; length=719bp
GATATAAAGCCCATATTTTTACTTCTCTCTCTTCCTATCCACCGCTCTCT
CTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCCAGATTTGCTTGTTTTT
GAGACAAAAAAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGA
GGAGGGAGTCTGTGGCAGCTTGGACAATCAATCACCCGTCGTTTGGCTCA
GGCTGATAAGAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAA
ACCTGAAAAAAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAG
ATGGTTCCATTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAAT
TATGGAATCTACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCT
CCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTT
GAGAAGCTTGTGATTGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGAC
TCTTACAGTCTTTACAAATGAAAATGGGGGTGCAATCGATGATTCGGTTA
TTACCAAGGTGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGC
AGGGATAAGGATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGC
CAAAGGTGGGGATGTCTCATGGCACATCACGATGAGAGATCTCTTCTTGC
CTTTCAGGCCCCTTGCTGC
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