FC923465

Overview
NameFC923465
Unique NameFC923465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923465_ssr564 microsatellite FC923465_ssr564:564..575. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14471 contig Ccv1_Contig14471:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 343.199 bits (879), Expect = 9.000e-94
Identity = 167/236 (70.76%), Postives = 199/236 (84.32%), Query Frame = 1
Query:   49 SNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVA-SFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHL-IKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            +NKQVI  ++V+GFPKESD    T ++ L+VPEGSK +VL+KNLYLSCDPYMR RM K D  S +A ++ PG+P+ GYGVS+V++S HP+YKK DL+WG+  WEEYS+I    H+  KI  T+VPLSYYTG+LGMPG+TAY G YE+CSPKKGE VYVSAASGAVGQLVGQFAK++GCYVVGSAGSKEKV+LLK KFGFDDAFNYK+E DL AALKRCFP+GID+YFENVGG MLD
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLD 237          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.181e-91
Identity = 165/238 (69.33%), Postives = 197/238 (82.77%), Query Frame = 1
Query:   49 SNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVA---SFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHL-IKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            +NKQVIL +YV+GFP ESD    T ++ L+VPEG+ ++VL+KNLYLSCDPYMR RM K D PS  A   ++ PG+P+ GYGVS++++S HP+YKK DL+WG+ +WEEYS+I    H   KI  T+VPLSYYTG+LGMPG+TAY G YE+CSPK+GE VYVSAASGAVGQLVGQ AK++GCYVVGSAGSKEKV+LLK KFGFDDAFNYK+E DL AALKRCFP GIDIYFENVGG MLD
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPD-PSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLD 239          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.557e-45
Identity = 108/235 (45.96%), Postives = 143/235 (60.85%), Query Frame = 1
Query:   49 SNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVL-DSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            S +Q+ L+    G P   D +  T    + VPE  +  VL+K LY+S DPYMRGRM   D  S+V  F   + L G  +++V+ D  H   KK D+V G  SW+E+S + S   L KI  +  P S Y GILGM GLTAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS EK++ LK +  FD+A NYK   D+  AL+   P+G+D+YF+NVGG + D
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAV-SESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISD 229          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.359e-40
Identity = 100/234 (42.74%), Postives = 139/234 (59.40%), Query Frame = 1
Query:   46 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG 738
            V  K   L  +  G P +SD ++ T    +++P  +   VLL+ L+LS DPYMR    +L +         G+ + G  V++V++S +P +    LV   + W  +S I   Q L K+L      +PLS   G +GMPG+TAY GL E+C  K G+ V V+AA+GAVG +VGQ AK+ GC VVG+AGS+EKV+ LK K GFD AFNYK    L+  LK+  P+G D YF+NVGG
Sbjct:    2 VRAKNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRLKE---------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHS-ISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK-KIGFDFAFNYKTVKSLEETLKKAAPDGYDCYFDNVGG 220          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 4.387e-40
Identity = 96/239 (40.17%), Postives = 138/239 (57.74%), Query Frame = 1
Query:   34 GEEAVSNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            G++   N++ +L++   G P   + ++        V    +  VLL+ +YLS DPYMRGRMS  D+PS+    + G  + G  VS+V++S HP+Y+  D V G + W++Y  I S   L+K+ D     S+  G+LGMPG TAY GL ++  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK        GFD   ++  +   +   K C P+GIDIY+ENVGG + D
Sbjct:    2 GQQKQRNRRWVLASRPHGAPVPENFRLEEDD----VATPGEGQVLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKAC-PKGIDIYYENVGGKVFD 232          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.774e-40
Identity = 105/244 (43.03%), Postives = 140/244 (57.38%), Query Frame = 1
Query:   46 VSNKQVILSNYV---TGFPKESD-MKIITGSINLKVPEGSKDT-VLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTN----VPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            VSN  VI+  Y+    G+P   + +       +L+  +  ++T VLLKN+Y S DPY+R RM      S++     G+P     V+KV+ ST   YK    V  ++ WEEY+ + S Q L  +   N    +PL  + G LGMP  TAY GL  +  PK GE +Y+SAASGAVGQ+ GQ AK +G +VVGS GS EK  +  +  G+D  FNYKKE     AL R  P+GIDIYFENVGG  +D
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFV-SKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKKESPF-KALPRLCPKGIDIYFENVGGETMD 242          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.851e-39
Identity = 101/234 (43.16%), Postives = 134/234 (57.26%), Query Frame = 1
Query:   46 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKI---LDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG 738
            V  K   L  +  GFP + + ++ T     ++P  +   VLL+ L+LS DPYMR    KL +         G+ + G  V++V++S +  + K  +V  L  W  +S I     L K+       +PLS   G +GMPGLTAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+   P+G D YF+NVGG
Sbjct:    2 VQAKSWTLKKHFEGFPTDGNFELKT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHS-ISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGG 220          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.335e-39
Identity = 103/235 (43.83%), Postives = 135/235 (57.45%), Query Frame = 1
Query:   46 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKIL----DTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG 738
            V  K   L  +  G+P  SD ++ T    +++P      VLL+ LYL+ DPYMR             S   G+ + G  V++V++S +  +    +V   + W  +S I + + L K+L    DT +PLS   G +GMPGLTAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD A NYK    L+ ALK   PEG D YF+NVGG
Sbjct:    2 VHAKSWTLKKHFVGYPTNSDFELKT----VELPPLKDGEVLLEALYLTVDPYMR---------IMAKSLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDT-LPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGG 220          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.081e-38
Identity = 97/233 (41.63%), Postives = 134/233 (57.51%), Query Frame = 1
Query:   46 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSP--QHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG 738
            V  K   L  +  G+P  S+ ++ T    +++P      VLL+ L+L+ DPYMR    KL +         G+ + G  V++V++S +  +    +V  L  W  +S+      + L+      +PLS   G +GMPGLTAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K+GFD AFNYK    L+  LK+  PEG D YF+NVGG
Sbjct:    2 VRAKSWTLKKHFVGYPTPSNFELKT----VELPPLKNGEVLLEALFLTVDPYMRIAARKLKE---------GDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLK-KYGFDVAFNYKTIESLEETLKKASPEGYDCYFDNVGG 220          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.106e-38
Identity = 98/233 (42.06%), Postives = 133/233 (57.08%), Query Frame = 1
Query:   46 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSP--QHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG 738
            V  K   L  +  GFP +S+ ++ T     ++P  +   VLL+ L+LS DPYMR    KL +         G+ + G  V++V++S +  +    +V  L  W  +S+      + L       +PLS   G +GMPGLTAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+   P+G D YF+NVGG
Sbjct:    2 VQAKTWTLKKHFEGFPTDSNFELRT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGG 220          
The following BLAST results are available for this feature:
BLAST of FC923465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
P2_ARATH9.000e-9470.76Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH4.181e-9169.33Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YFMJ_BACSU1.557e-4545.96Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_RABIT3.359e-4042.74Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
YNCB_ECOLI4.387e-4040.17Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YKM8_SCHPO9.774e-4043.03Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_MOUSE4.851e-3943.16Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_BOVIN6.335e-3943.83Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_PIG1.081e-3841.63Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR1_RAT4.106e-3842.06Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31705D02EF StrClemenN Citrus clementina cDNA clone C31705D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923465 ID=FC923465; Name=FC923465; organism=Citrus clementina; type=EST; length=751bp
GATCCAAAAACAAAATCTACATAAAAAATGGCGGGTGAAGAAGCAGTGAG
CAACAAGCAGGTGATTCTGAGCAACTACGTGACAGGGTTTCCCAAGGAAT
CAGACATGAAGATAATAACAGGCTCAATAAACCTGAAGGTGCCAGAGGGC
TCAAAAGACACAGTGCTTTTGAAGAATCTTTATCTTTCCTGTGATCCTTA
CATGAGAGGACGTATGAGTAAGCTTGATAAGCCTTCGTTTGTTGCCTCCT
TCAACCCTGGCGAGCCCTTGGGCGGATATGGAGTGTCCAAAGTGTTGGAT
TCCACACATCCAAATTATAAGAAAGATGACTTGGTCTGGGGCTTAACCAG
TTGGGAGGAGTACAGTCTCATCCAATCACCACAACATCTGATTAAAATTC
TGGATACAAATGTGCCTCTGTCATACTATACTGGGATTCTTGGTATGCCT
GGTTTGACTGCATATGGTGGTTTATATGAGCTTTGCTCTCCTAAGAAAGG
AGAGTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTCAGCTAGTTG
GGCAATTTGCAAAGTTGGTTGGTTGCTATGTTGTTGGAAGTGCAGGAAGC
AAAGAAAAGGTCAATCTGTTGAAGAACAAGTTTGGGTTTGATGATGCTTT
TAACTATAAGAAAGAGCCAGACTTGGATGCAGCTCTTAAGAGGTGCTTTC
CTGAAGGCATCGACATCTATTTCGAAAATGTTGGGGGGTAGATGCTTGAT
G
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