FC923466

Overview
NameFC923466
Unique NameFC923466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6848 contig Ccv1_Contig6848:496..1222. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923466 vs. ExPASy Swiss-Prot
Match: MEP1_SOYBN (Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.116e-37
Identity = 81/182 (44.51%), Postives = 108/182 (59.34%), Query Frame = 3
Query:  180 AWD--AFQNFTGCHPGDKMDGLAKLKKYFHYFGYIPDLPSNFTDDFDDMLESAVKTYQKNFNLEPTGQLDSQTMQHILRPRCGNPDIVNGTTTMNSGKPTSYNATSSINGHLHSVGHYSFFPGMPRWPSNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTGVYTTADIRIGF 719
            AWD  A   FT  HPG    GL+ +K YFH+ GYIP+ P +F D+FDD L SA+KTYQKN+NL  TG+ D  T++ I+ PRCG PDI+     +N+ K TS+   S           Y+FF  MPRW +    LTYAF P+ +L D  K+  A AF +W+   ++ F  T  Y TA+I+I F
Sbjct:   33 AWDGEATYKFTTYHPGQNYKGLSNVKNYFHHLGYIPNAP-HFDDNFDDTLVSAIKTYQKNYNLNVTGKFDINTLKQIMTPRCGVPDII-----INTNKTTSFGMISD----------YTFFKDMPRWQAGTTQLTYAFSPEPRLDDTFKSAIARAFSKWTPVVNIAFQETTSYETANIKILF 198          
The following BLAST results are available for this feature:
BLAST of FC923466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MEP1_SOYBN1.116e-3744.51Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2[more]
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Properties
Property NameValue
Genbank descriptionC31705D04EF StrClemenN Citrus clementina cDNA clone C31705D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923466 ID=FC923466; Name=FC923466; organism=Citrus clementina; type=EST; length=727bp
GAGAGAAAATCACATTTTCTTCCCAGCCAAACATCACACCCACATCGAAA
ATGAGATACCTTCTTCTTGTGGCAACAGCAATTACAGTTCTATCACTGTC
GCCCACTCAAACATCAGCTCATTTCTTCCCCAACATATCATCAATCCCCA
CATGGATACTCTCAAACGCCACCGCCAGCGCGTGGGACGCGTTTCAGAAT
TTCACCGGATGCCACCCCGGCGACAAGATGGACGGCTTAGCCAAGCTCAA
GAAGTACTTTCACTACTTCGGTTACATTCCAGATTTGCCCTCGAATTTCA
CTGACGACTTCGACGACATGCTCGAATCGGCAGTCAAAACTTATCAAAAG
AACTTCAATCTGGAACCCACCGGCCAACTCGACAGTCAAACAATGCAACA
CATCCTACGGCCCAGATGCGGTAATCCAGACATAGTCAACGGCACAACAA
CCATGAACTCAGGGAAACCGACGTCGTATAACGCCACTTCTAGTATTAAT
GGTCACTTACACAGCGTCGGTCACTACAGTTTCTTCCCCGGCATGCCACG
TTGGCCTTCGAATAAGCGCGATCTGACGTACGCGTTCTTGCCCGATAACC
AATTGACTGACGAAGTCAAGAACGTATTTGCGACAGCCTTTGACCGCTGG
TCGGAAGCGACGTCGTTGACTTTCACTCGGACGGGCGTTTACACGACCGC
CGATATCAGGATCGGGTTCTTTACTGG
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