FC923467

Overview
NameFC923467
Unique NameFC923467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14420 contig Ccv1_Contig14420:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923467 vs. ExPASy Swiss-Prot
Match: E134_MAIZE (Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 80/174 (45.98%), Postives = 109/174 (62.64%), Query Frame = 2
Query:  161 QCCANPPTLNPN----SGAGHV--EKLGGLNAYVTGSPDSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSKGITAIGAAGFCWGAKVVVQLGKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEID 664
            QC  NPP  + +    + AG V  +  GGL AYV+G+  S  AV+L SDV+GYEAP LR++ DKVA AG++V VPDF  GD    D  K   EW++ H   K  E+AKP+  ALK +G  ++   G+CWG K+ V++GK   ++A  L HP  VT DD+K V+ P+ ILGA+ D
Sbjct:   28 QCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAASSSRAVVLASDVFGYEAPLLRQIVDKVAKAGYFVVVPDFLKGD--YLDDKKNFTEWLEAHSPVKAAEDAKPLFAALKKEG-KSVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQND 198          
BLAST of FC923467 vs. ExPASy Swiss-Prot
Match: AIM2_YEAST (Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 57/177 (32.20%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  158 PQCCANPPTLNPNSGAGHVEKLGGLNAYVTGSPDSKLAVLLI-SDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQ--LGKREFIQAAVLLHPSFVTVDDIKGVE--VPLSILGAEIDRL 670
            P  C      +  +  G  E++ GL+ Y  GS   K  V++I +DVYG +  N+   ADK A+AG+ V VPD   GD   +D       W + H  +   +     ++ LK +     IG  G+C+GAK  VQ   G      AA + HPSFV++++I+ ++   P+ I  AE D +
Sbjct:    6 PGKCCFEGVCHDGTPKGRREEIFGLDTYAAGSTSPKEKVIVILTDVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAISSDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGYCFGAKFAVQHISGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHI 182          
BLAST of FC923467 vs. ExPASy Swiss-Prot
Match: CMBL_MOUSE (Carboxymethylenebutenolidase homolog OS=Mus musculus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 53/160 (33.12%), Postives = 83/160 (51.88%), Query Frame = 2
Query:  200 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGG-KPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQ-LGKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEID 664
            G GH  ++  + AYVT SP D+  AV+++ D++G++ PN R +AD +A  G+   VPDFF G +P+   G       W+K     K   E   V++ L+ +     IG  GFCWG  VV Q +     I+A V ++      +D+  ++ P   + AE D
Sbjct:   20 GMGHEVQVEHIKAYVTRSPVDAGKAVIVVQDIFGWQLPNTRYMADMIARNGYTTIVPDFFVGQEPWDPAGDWSTFPAWLKSRNARKVNREVDAVLRYLRQQCHAQKIGIVGFCWGGVVVHQVMTAYPDIRAGVSVYGIIRDSEDVYNLKNPTLFIFAEND 179          
BLAST of FC923467 vs. ExPASy Swiss-Prot
Match: CMBL_HUMAN (Carboxymethylenebutenolidase homolog OS=Homo sapiens GN=CMBL PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 53/160 (33.12%), Postives = 82/160 (51.25%), Query Frame = 2
Query:  200 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGKPL-QEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQL-GKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEID 664
            G G   ++  + AYVT SP D+  AV++I D++G++ PN R +AD ++  G+   VPDFF G +P+   G   +  EW+K     K   E   +++ LK +     IG  GFCWG   V  L  K    +A V ++      +DI  ++ P   + AE D
Sbjct:   20 GLGREVQVEHIKAYVTKSPVDAGKAVIVIQDIFGWQLPNTRYIADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGTAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAEND 179          
BLAST of FC923467 vs. ExPASy Swiss-Prot
Match: CMBL_PONAB (Carboxymethylenebutenolidase homolog OS=Pongo abelii GN=CMBL PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 53/160 (33.12%), Postives = 82/160 (51.25%), Query Frame = 2
Query:  200 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGKPL-QEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQL-GKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEID 664
            G G   ++  + AYVT SP D+  AV++I D++G++ PN R +AD ++  G+   VPDFF G +P+   G   +  EW+K     K   E   +++ LK +     IG  GFCWG   V  L  K    +A V ++      +DI  ++ P   + AE D
Sbjct:   20 GLGREVQVEHIKAYVTKSPVDAGKAVIVIQDIFGWQLPNTRYMADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGIAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAEND 179          
BLAST of FC923467 vs. ExPASy Swiss-Prot
Match: CMBL_RAT (Carboxymethylenebutenolidase homolog OS=Rattus norvegicus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 51/160 (31.87%), Postives = 81/160 (50.62%), Query Frame = 2
Query:  200 GAGHVEKLGGLNAYVTGSP-DSKLAVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGG-KPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQ-LGKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEID 664
            G G   ++  + AYVT SP D+  AV+++ D++G++  N R +AD +A  G+   VPDFF G +P+   G      EW+K     K   E   V++ LK +     IG  GFCWG  VV   +     ++A V ++      +D+  ++ P   + AE D
Sbjct:   20 GMGQEVQVEHIKAYVTRSPVDAGKAVIVVQDIFGWQLSNTRYMADMIAGNGYTTIVPDFFVGQEPWDPAGDWSTFPEWLKSRNARKINREVDAVLRYLKQQCHAQKIGIVGFCWGGIVVHHVMTTYPEVRAGVSVYGIIRDSEDVYNLKNPTLFIFAEND 179          
The following BLAST results are available for this feature:
BLAST of FC923467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
E134_MAIZE1.713e-3445.98Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=... [more]
AIM2_YEAST7.994e-1632.20Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 P... [more]
CMBL_MOUSE8.838e-1533.13Carboxymethylenebutenolidase homolog OS=Mus muscul... [more]
CMBL_HUMAN1.969e-1433.13Carboxymethylenebutenolidase homolog OS=Homo sapie... [more]
CMBL_PONAB3.358e-1433.13Carboxymethylenebutenolidase homolog OS=Pongo abel... [more]
CMBL_RAT3.713e-1331.88Carboxymethylenebutenolidase homolog OS=Rattus nor... [more]
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Properties
Property NameValue
Genbank descriptionC31705D05EF StrClemenN Citrus clementina cDNA clone C31705D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923467 ID=FC923467; Name=FC923467; organism=Citrus clementina; type=EST; length=670bp
CCATAGGTGATAGGTCCCCCATTAACAGAACTTTTACCTGTATGGTCTCT
CCATTGGATAAAAATAAAATCATAAAAGTAGTGGCGATATCAGAAAAGAG
TGTTTTCTAAACAGCTGTGCTTACTAAGGAAGGTTGAGCAGAAGAAAAAT
GTCAGGTCCTCAGTGCTGTGCAAATCCACCGACATTGAATCCAAACAGTG
GAGCAGGTCATGTTGAGAAACTTGGTGGACTCAACGCTTATGTCACTGGC
TCTCCTGATTCCAAGCTTGCCGTTCTTCTCATTTCCGACGTTTATGGTTA
TGAAGCTCCAAACTTGAGGAAGCTTGCAGACAAGGTTGCAGCAGCTGGAT
TCTACGTGGCAGTTCCTGACTTCTTTCATGGGGATCCATATGTAGCTGAT
GGTGGGAAACCTCTACAAGAATGGATAAAAGATCATGGTGTGGATAAGGG
ATTTGAAGAGGCAAAGCCAGTTATTCAAGCTCTTAAGAGTAAAGGTATAA
CTGCAATTGGAGCTGCGGGCTTCTGCTGGGGCGCTAAAGTGGTTGTTCAA
CTAGGAAAACGTGAGTTCATCCAAGCTGCTGTGCTGTTACATCCCTCTTT
TGTCACTGTAGATGATATCAAGGGGGTTGAGGTTCCCCTTTCAATTCTAG
GAGCCGAAATTGATCGCTTG
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