FC923469

Overview
NameFC923469
Unique NameFC923469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923469 vs. ExPASy Swiss-Prot
Match: AFB2_ARATH (Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.612e-97
Identity = 177/237 (74.68%), Postives = 196/237 (82.70%), Query Frame = 2
Query:    5 DPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPS---GVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR 706
            DP SE+Y+KL A + KC S+RSLSGFLE  P CLSA HP+C NLTSLNLSYA  IHG+ LIKLI+ C+KL+RLWILDSIGD+GL VVA TCKELQELRVFPS   G  N AVTEEGLVAISAGCPKLHS+LYFCQQMTNAAL+TVAKN  NF RFRLCIL+  KPD VT QPLDEGFGAIV++CK           TDQVFLYIGMYA QLEMLSIAFAG++DKGMLYVLNGCKK++
Sbjct:  243 DPDSESYLKLMAVIKKCTSLRSLSGFLEAAPHCLSAFHPICHNLTSLNLSYAAEIHGSHLIKLIQHCKKLQRLWILDSIGDKGLEVVASTCKELQELRVFPSDLLGGGNTAVTEEGLVAISAGCPKLHSILYFCQQMTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPLDEGFGAIVKACKSLRRLSLSGLLTDQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVLNGCKKMK 479          
BLAST of FC923469 vs. ExPASy Swiss-Prot
Match: AFB3_ARATH (Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 2.895e-91
Identity = 169/239 (70.71%), Postives = 191/239 (79.92%), Query Frame = 2
Query:    5 DPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGV-----DNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR 706
            +P  E++ KL   + K  S+RSLSGFLEV P CL A +P+CQNL SLNLSYA  I GN LIKLI+ C++L+RLWILDSIGD+GL VVA TCKELQELRVFPS V     +NA+VTE GLVAISAGCPKLHS+LYFC+QMTNAALI VAKN  NF RFRLCIL+  KPD +T Q LDEGFGAIVQ+CK           TDQVFLYIGMYAEQLEMLSIAFAG++DKGMLYVLNGCKK+R
Sbjct:  243 EPDPESFAKLMTAIKKYTSLRSLSGFLEVAPLCLPAFYPICQNLISLNLSYAAEIQGNHLIKLIQLCKRLQRLWILDSIGDKGLAVVAATCKELQELRVFPSDVHGEEDNNASVTEVGLVAISAGCPKLHSILYFCKQMTNAALIAVAKNCPNFIRFRLCILEPHKPDHITFQSLDEGFGAIVQACKGLRRLSVSGLLTDQVFLYIGMYAEQLEMLSIAFAGDTDKGMLYVLNGCKKMR 481          
BLAST of FC923469 vs. ExPASy Swiss-Prot
Match: TIR1B_ORYSJ (Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.190e-82
Identity = 153/237 (64.56%), Postives = 182/237 (76.79%), Query Frame = 2
Query:    5 DPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSG---VDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR 706
            D  +E+Y KL + L KCK +RSLSGF +  P CLS I+P+C  LT LNLSYAP +  ++L K+I  C KL+RLW+LD I D+GL VVA +CK+LQELRVFPS       +AVTEEGLVA+S GCPKL+SLLYFC QMTNAAL+TVAKN  NFTRFRLCIL+  KPD VT QPLDEGFGAIV+ CK           TD+VF+YIG YA+QLEMLSIAFAG+SDKGM++V+NGCK LR
Sbjct:  243 DFQTESYFKLTSALEKCKMLRSLSGFWDASPVCLSFIYPLCAQLTGLNLSYAPTLDASDLTKMISRCVKLQRLWVLDCISDKGLQVVASSCKDLQELRVFPSDFYVAGYSAVTEEGLVAVSLGCPKLNSLLYFCHQMTNAALVTVAKNCPNFTRFRLCILEPGKPDVVTSQPLDEGFGAIVRECKGLQRLSISGLLTDKVFMYIGKYAKQLEMLSIAFAGDSDKGMMHVMNGCKNLR 479          
BLAST of FC923469 vs. ExPASy Swiss-Prot
Match: TIRC_ORYSJ (Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.805e-70
Identity = 138/231 (59.74%), Postives = 165/231 (71.43%), Query Frame = 2
Query:   20 AYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAA--VTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR 706
            AY  L  +   C  ++SLSGF +     +  I PVC+NLT LNLS AP +    LI+ I  C+KL++LW+LD IGD GL +VA +C +LQELRVFP+  +  A  VTEEGLVAISAGC KL S+LYFCQ+MTN+ALITVAKN   FT FRLC+LD    D VT QPLDEG+GAIVQSCK           TD VFLYIGMYAE+LEMLS+AFAG++D GM YVLNGCK L+
Sbjct:  243 AYAGLFNSFQHCSLLKSLSGFWDATSLFIPVIAPVCKNLTCLNLSSAPMVRSAYLIEFICQCKKLQQLWVLDHIGDEGLKIVASSCIQLQELRVFPANANARASTVTEEGLVAISAGCNKLQSVLYFCQRMTNSALITVAKNCPRFTSFRLCVLDPGSADAVTGQPLDEGYGAIVQSCKGLRRLCLSGLLTDTVFLYIGMYAERLEMLSVAFAGDTDDGMTYVLNGCKNLK 473          
BLAST of FC923469 vs. ExPASy Swiss-Prot
Match: TIR1_ARATH (Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 1.002e-67
Identity = 130/234 (55.56%), Postives = 168/234 (71.79%), Query Frame = 2
Query:   17 EAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGV----DNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR 706
            + Y  L   L  CK +R LSGF + VP  L A++ VC  LT+LNLSYA  +   +L+KL+  C KL+RLW+LD I D GL V+A TCK+L+ELRVFPS       N A+TE+GLV++S GCPKL S+LYFC+QMTNAALIT+A+N  N TRFRLCI++ + PD +T++PLD GFGAIV+ CK           TD+VF YIG YA+++EMLS+AFAG+SD GM +VL+GC  LR
Sbjct:  252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484          
BLAST of FC923469 vs. ExPASy Swiss-Prot
Match: TIR1A_ORYSJ (Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.729e-65
Identity = 131/235 (55.74%), Postives = 163/235 (69.36%), Query Frame = 2
Query:    5 DPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAA-VTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR 706
            D  S+ + KL+A    CKS+R LSG  + VP  L A + VC+ LTSLNLSYA  + G ELIK I  CR L++LW++D I D GL VVA +C +LQELRVFPS    A  +TE GLV +SA CP L S+LYFC++MTN ALIT+AKN  NFT FRLCIL+   PD +T +PLD GF AIV+SC+           TD VF  IG +A++LEMLSIAFAGNSD G+ Y+L+GCK L+
Sbjct:  262 DYHSDLFAKLEAAFGGCKSLRRLSGAWDAVPDYLPAFYCVCEGLTSLNLSYAT-VRGPELIKFISRCRNLQQLWVMDLIEDHGLAVVASSCNKLQELRVFPSDPFGAGFLTERGLVDVSASCPMLESVLYFCRRMTNEALITIAKNRPNFTCFRLCILEPHTPDYITREPLDAGFSAIVESCRGLRRLSISGLLTDLVFKSIGAHADRLEMLSIAFAGNSDLGLHYILSGCKSLK 495          
BLAST of FC923469 vs. ExPASy Swiss-Prot
Match: TIR1L_ARATH (Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.737e-56
Identity = 119/237 (50.21%), Postives = 150/237 (63.29%), Query Frame = 2
Query:    5 DPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGV---DNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR 706
            +P SE      A    CKS+  LSGF E++P  L AI PVC NLTSLN SYA  I  +    +I  C KL+  W LDSI D GL  VA TCKEL+ELR+FP          V+E GL AIS GC KL S+LYFCQ+MTNAA+I +++N    T FRLCI+ R +PD VT +P+DEGFGAIV++CK           TDQ F Y+G Y + +  LS+AFAG+SD  + +VL GC +L+
Sbjct:  295 EPQSEQEPDYAAAFRACKSVVCLSGFRELMPEYLPAIFPVCANLTSLNFSYA-NISPDMFKPIILNCHKLQVFWALDSICDEGLQAVAATCKELRELRIFPFDPREDSEGPVSELGLQAISEGCRKLESILYFCQRMTNAAVIAMSENCPELTVFRLCIMGRHRPDHVTGKPMDEGFGAIVKNCKKLTRLAVSGLLTDQAFRYMGEYGKLVRTLSVAFAGDSDMALRHVLEGCPRLQ 530          
BLAST of FC923469 vs. ExPASy Swiss-Prot
Match: GRH1_ARATH (GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.798e-56
Identity = 112/234 (47.86%), Postives = 156/234 (66.67%), Query Frame = 2
Query:   17 EAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVD----NAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR 706
            EA+ KL      CK ++SLSG  +V+P  L A++ VC  LTSLNLSYA  +   +L++L+R C KL++LW++D I D+GL  VA  CKEL+ELRVFPS  D    N  +TE+GLV +S GC KL S+LYFC Q TNAAL T+A+   N   FRLC+++   PD  T +PLD+GF AI + C+           +D+ F YIG +A+++ MLSIAFAG+SD  + ++L+GC+ L+
Sbjct:  248 EAFSKLSEAFSNCKQLQSLSGLWDVLPEYLPALYSVCPGLTSLNLSYAT-VRMPDLVELLRRCSKLQKLWVMDLIEDKGLEAVASYCKELRELRVFPSEPDLDATNIPLTEQGLVFVSKGCRKLESVLYFCVQFTNAALFTIARKRPNLKCFRLCVIEPFAPDYKTNEPLDKGFKAIAEGCRDLRRLSVSGLLSDKAFKYIGKHAKKVRMLSIAFAGDSDLMLHHLLSGCESLK 480          
BLAST of FC923469 vs. ExPASy Swiss-Prot
Match: FBX14_ARATH (F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.835e-53
Identity = 117/236 (49.58%), Postives = 141/236 (59.75%), Query Frame = 2
Query:    8 PSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGV---DNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR 706
            P  E      A    CKSI  LSGF E  P  L AI  VC NLTSLN SYA  I  + L  +I  C  +   W LDSI D GL  VA TCKEL+ELR+FP          V+  GL AIS GC KL S+LYFCQ MTN A+  +++N    T FRLCI+ R +PD VT +P+D+GFGAIV++CK           TD+ F YIG Y + +  LS+AFAGNSDK + YVL GC KL+
Sbjct:  296 PQGEQQPDYAAAFRACKSIVCLSGFREFRPEYLLAISSVCANLTSLNFSYA-NISPHMLKPIISNCHNIRVFWALDSIRDEGLQAVAATCKELRELRIFPFDPREDSEGPVSGVGLQAISEGCRKLESILYFCQNMTNGAVTAMSENCPQLTVFRLCIMGRHRPDHVTGKPMDDGFGAIVKNCKKLTRLAVSGLLTDEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLEGCPKLQ 530          
BLAST of FC923469 vs. ExPASy Swiss-Prot
Match: COI1_ARATH (Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 64/208 (30.77%), Postives = 102/208 (49.04%), Query Frame = 2
Query:  113 IHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVD-------NAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCK---XXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR 706
            + P    +  L+L YA  +   +   LI+ C  LE L   + IGDRGL V+A  CK+L+ LR+   G D          V++ GL+A++ GC +L  +  +   +TN +L ++     N   FRL +LDRE  + +T  PLD G  +++  CK              TD    YIG Y+  +  + + + G SD+G++    GC  L+
Sbjct:  288 LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI-ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE--ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491          
The following BLAST results are available for this feature:
BLAST of FC923469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AFB2_ARATH4.612e-9774.68Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis tha... [more]
AFB3_ARATH2.895e-9170.71Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis tha... [more]
TIR1B_ORYSJ4.190e-8264.56Transport inhibitor response 1-like protein Os04g0... [more]
TIRC_ORYSJ4.805e-7059.74Transport inhibitor response 1-like protein Os11g0... [more]
TIR1_ARATH1.002e-6755.56Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidop... [more]
TIR1A_ORYSJ2.729e-6555.74Transport inhibitor response 1-like protein Os05g0... [more]
TIR1L_ARATH6.737e-5650.21Transport inhibitor response 1-like protein OS=Ara... [more]
GRH1_ARATH8.798e-5647.86GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH... [more]
FBX14_ARATH1.835e-5349.58F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX... [more]
COI1_ARATH2.264e-1930.77Coronatine-insensitive protein 1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC31705D07EF StrClemenN Citrus clementina cDNA clone C31705D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923469 ID=FC923469; Name=FC923469; organism=Citrus clementina; type=EST; length=714bp
ATATGATCCATCTTCTGAGGCCTACATCAAATTGAAGGCTACCCTTGTGA
AGTGTAAGTCAATAAGAAGTTTGTCGGGATTTTTGGAGGTTGTTCCTTGC
TGCCTGTCGGCTATTCATCCTGTTTGCCAGAACCTAACTTCGTTGAATCT
AAGCTATGCTCCGGGCATTCATGGTAATGAGCTAATAAAGCTAATTCGGT
TCTGCAGGAAACTTGAGCGATTATGGATACTGGATTCTATTGGAGACAGA
GGACTAGGAGTTGTAGCTTTCACCTGTAAAGAATTGCAAGAATTGAGGGT
TTTCCCATCTGGGGTCGACAATGCTGCTGTAACAGAGGAAGGCCTGGTTG
CCATATCAGCTGGTTGCCCGAAGCTGCATTCATTGCTTTACTTCTGCCAG
CAAATGACTAATGCCGCCCTAATAACTGTAGCCAAGAATAATTCAAATTT
CACTCGCTTCAGATTGTGCATCCTTGACCGTGAAAAACCTGACCCTGTCA
CCATGCAGCCTTTGGATGAAGGTTTTGGGGCAATTGTACAATCATGCAAG
CGTCTAAGGCGATTGTCACTCTCTGGCCTTTTAACTGACCAGGTTTTCCT
TTACATTGGAATGTATGCTGAGCAGCTGGAAATGCTTTCTATTGCATTTG
CTGGGAATAGCGACAAGGGAATGCTGTATGTATTGAACGGGTGCAAGAAG
CTCCGCAGCTGGAA
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