FC923474

Overview
NameFC923474
Unique NameFC923474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10352 contig Ccv1_Contig10352:52..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP5_ARATH (ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.958e-62
Identity = 120/161 (74.53%), Postives = 135/161 (83.85%), Query Frame = 1
Query:  256 PNPSSNIDAHKLSHTFRPIGSRKPRKLVSIQKNLRNSSVRAVYSGKFWAPDRSYRQGIWSIRDDLQIPSSPYFPVHAQGPPPANPMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            PN SS  D+ KLS  F P+ SRK  KLVS +KN +NS+ +AVYSG  W P+    QG+WSIRDDLQ+PSSPYFP +AQG  P  PMVQERFQS+ISQLFQ+RIIRCGGAVDDDMANIIVAQLLYLDA+DP KDIV+YVNSPGGSVTAGMAIFDTM+HIRPD
Sbjct:   24 PNGSS-FDSPKLSLPFEPLRSRKTNKLVSDRKNWKNSTPKAVYSGNLWTPEIPSPQGVWSIRDDLQVPSSPYFPAYAQGQGPP-PMVQERFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPD 182          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP1_ANAVT (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  VD ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IFDTMKHIRPD
Sbjct:   14 ERAFDIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIFDTMKHIRPD 86          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP1_ANASP (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RI+  G  VD ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IFDTMKHIRPD
Sbjct:   14 ERAFDIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIFDTMKHIRPD 86          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  VDDD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AGMAI+DTM+HI+PD
Sbjct:   13 ERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPD 85          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  VDDD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AGMAI+DTM+HI+PD
Sbjct:   13 ERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPD 85          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_PASMU (ATP-dependent Clp protease proteolytic subunit OS=Pasteurella multocida GN=clpP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.860e-19
Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + R+I  GG V+D MAN+IVAQLL+L++ DP KDI IY+NSPGGSVTAGMAI+DTM+ ++PD
Sbjct:   15 ERSYDIYSRLLKERVIFLGGEVEDRMANLIVAQLLFLESEDPEKDINIYINSPGGSVTAGMAIYDTMQFVKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_MOOTA (ATP-dependent Clp protease proteolytic subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.860e-19
Identity = 43/73 (58.90%), Postives = 60/73 (82.19%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G A+DD +AN+++AQ+L+L+A DP KDI +Y+NSPGGS++AGMAIFDTM++IRPD
Sbjct:   16 ERAYDIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGSISAGMAIFDTMQYIRPD 88          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_MACCJ (ATP-dependent Clp protease proteolytic subunit OS=Macrococcus caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G A+DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAGMAI+DTM+HI+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGMAIYDTMQHIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_AQUAE (ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus GN=clpP PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L Q RI+  G  +DD +AN+IVAQLL+L++ DP KDI +Y+NSPGGSVTAG+AI+DTM++I+PD
Sbjct:   22 ERAYDIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYLYINSPGGSVTAGLAIYDTMQYIKPD 94          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_SYNWW (ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 42/73 (57.53%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD +AN+++AQLL+L+A DP KDI +Y+NSPGGS+TAGMAI+DT+++IRPD
Sbjct:   16 ERSYDIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGMAIYDTLQYIRPD 88          
The following BLAST results are available for this feature:
BLAST of FC923474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP5_ARATH3.958e-6274.53ATP-dependent Clp protease proteolytic subunit 5, ... [more]
CLPP1_ANAVT7.551e-2167.12ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_ANASP9.862e-2165.75ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP2_SYNJB1.090e-1963.01ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJA1.090e-1963.01ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PASMU1.860e-1961.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MOOTA1.860e-1958.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MACCJ2.429e-1961.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AQUAE3.173e-1958.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SYNWW4.143e-1957.53ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31705D12EF StrClemenN Citrus clementina cDNA clone C31705D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923474 ID=FC923474; Name=FC923474; organism=Citrus clementina; type=EST; length=739bp
GGTTGCAACTTGCAAGTCATTTTTTGTTGTTGCTGGAACGGTACTCTTAT
CGGTCCAAATCCCGGCGCCCTCCACATCCAGCCTTTAACATCAAGCAGAT
AAGGCGCTTCTGATTTGGAGGAAAATAAAAAGCCTCCACCTAATTTACCG
AAAACGTCTTTCAGACACTGCCACATAAACGGCAAAAATCGAAGAGATAT
GGCACAAACGAGCGCTTCCACATCTTCGGCATCGTTGTACTCTCTTGTCG
TCTCTCCAAACCCTAGCTCCAATATCGACGCTCATAAACTCTCTCACACC
TTCCGCCCCATTGGTTCCCGGAAACCAAGGAAACTAGTTAGTATTCAAAA
GAATTTGCGGAATTCTTCAGTAAGGGCTGTCTACTCTGGCAAGTTTTGGG
CTCCAGATAGAAGTTATCGCCAGGGGATTTGGTCCATTAGGGATGATTTG
CAAATCCCATCTTCACCATACTTCCCTGTACATGCGCAAGGGCCACCACC
TGCTAACCCGATGGTGCAAGAGCGGTTTCAGAGTGTTATCAGTCAACTTT
TCCAGCATAGAATAATTCGCTGTGGTGGAGCTGTTGATGATGACATGGCG
AACATTATTGTAGCTCAGCTTCTCTATCTTGATGCTATTGATCCTCACAA
GGATATTGTTATCTATGTCAATTCTCCAGGAGGATCAGTTACTGCCGGTA
TGGCCATATTTGACACTATGAAGCATATTCGACCTGATG
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