FC923477

Overview
NameFC923477
Unique NameFC923477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14475 contig Ccv1_Contig14475:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923477 vs. ExPASy Swiss-Prot
Match: CIA30_ARATH (Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 4.139e-90
Identity = 140/173 (80.92%), Postives = 159/173 (91.91%), Query Frame = 2
Query:  167 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITDSGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLP 679
            MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSASLEI D G+G +  G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA++++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AKIPLARYLP
Sbjct:    1 MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSASLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIALRIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKIPLARYLP 173          

HSP 2 Score: 50.0618 bits (118), Expect = 4.139e-90
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 1
Query:  679 TWRGNVIDAEMEMNPSRXVGMSLSVN 756
            TWRGNVID EMEMNP R +GMSLSVN
Sbjct:  174 TWRGNVIDVEMEMNPGRVLGMSLSVN 199          
The following BLAST results are available for this feature:
BLAST of FC923477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CIA30_ARATH4.139e-9080.92Probable complex I intermediate-associated protein... [more]
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Properties
Property NameValue
Genbank descriptionC31705E03EF StrClemenN Citrus clementina cDNA clone C31705E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923477 ID=FC923477; Name=FC923477; organism=Citrus clementina; type=EST; length=757bp
GGAGGTTAAGNACCAAAAACAAATCACACTTGTCTTTGAACCTTGTATGT
TGTGTCGAAGGCCCACCGTGGCGGTGAATCGGTGACTGACCGCGCTACTG
CCTACTGACTTCCCATCGGCAGTGACGGCTTCAAAACACTGGAGCTTTGT
GAAGTGCTTAAGAGATATGTCAAGATTTCGTGGATTGTGGCAAGCTTCTT
TGAATGCTACGAAGAGAGCTCTTACATGGAATCTCGAAGAGTTGATGCCC
CCTAGTGAGAGATATATATTCAACTTCAATTCAAAGGAAGAGTTAAAGAA
GTGGCATCTATATTCAGATTCTGAATATGGAGGGTTGTCCTCGGCATCTT
TGGAGATTACAGATTCTGGAAACGGAATGAATGGGATTTTCTCTGGGAAC
CTTTCCCTGGACCTAAGTGAGGGTTCAAAATGGAACATCAGTCGGAGTGG
ATTCTGTGGGATGCGGTCCAAGAAGTTTGATGGTTTCATTGATTTAGATT
CATATGATACAATAGCAATGAAGCTGAAAGGAGATGGGAGATGCTACATA
TCAACTATTTATACAGAAAACTGGGTGAATTCACCTGGGCAACAAGAAGA
TAATTCATGGCAATCTTTCGTTTTTGTACCCAAAGATAACTGGTATATTG
CAAAGATTCCTCTTGCGCGATATTTACCACATGGAGAGGAAATGTTATAG
ATGCAGAGATGGAGATGAACCCTTCTCGTGNTGTCGGCATGTCTCTATCG
GTTAATG
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