FC923478

Overview
NameFC923478
Unique NameFC923478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig161 contig Ccv1_Contig161:523..1260. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923478 vs. ExPASy Swiss-Prot
Match: SPG21_DANRE (Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 57/129 (44.19%), Postives = 86/129 (66.67%), Query Frame = 3
Query:   15 WAPIVSWT-PSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASVGNLLLSDSHITIMDTNDYCATSQQLKDQLSERYSGARQAYMKTGGEFPFLSRPDEVNLHLQLHLRR 398
            W     W  PSF+LK+ VL     GP +P +AD++DF+V ++E+L++ +LASRLTL    + V    + D  +TIMD  D  A SQ+ K+++ + Y  AR+A++KTGG FP+L R  EVNL++Q+HLR+
Sbjct:  147 WTANSFWLMPSFMLKKIVLGNFAKGPVDPKMADAIDFMVDRLESLNQSELASRLTLNCQNSYVEPHKIKDIAVTIMDVFDQSALSQEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYIQIHLRQ 275          
BLAST of FC923478 vs. ExPASy Swiss-Prot
Match: SPG21_BOVIN (Maspardin OS=Bos taurus GN=SPG21 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 3
Query:   15 WAPIVSWT-PSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASVGNLLLSDSHITIMDTNDYCATSQQLKDQLSERYSGARQAYMKTGGEFPFLSRPDEVNLHLQLHL 392
            W     W  PSF+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V    + D  +TIMD  D  A S + K+++ + Y  AR+A++KTGG FP+L R  EVNL++Q+HL
Sbjct:  147 WTASSFWLMPSFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHL 273          
BLAST of FC923478 vs. ExPASy Swiss-Prot
Match: SPG21_XENLA (Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 54/129 (41.86%), Postives = 85/129 (65.89%), Query Frame = 3
Query:   15 WAPIVSWT-PSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASVGNLLLSDSHITIMDTNDYCATSQQLKDQLSERYSGARQAYMKTGGEFPFLSRPDEVNLHLQLHLRR 398
            W     W  P+F+LK+ +L     GP +P +AD++DF+V ++E+L++ +LASRLTL    A V    + D+ +TIMD  D  A S   K+++ + Y  AR+A++KTGG FP+L R  EV+L++Q+HLR+
Sbjct:  147 WTANSFWLMPAFMLKKILLGNFSSGPVDPVMADAIDFMVDRLESLNQSELASRLTLNCQNAYVEPHKIRDTAVTIMDVFDQSALSMDAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVSLYVQIHLRQ 275          
BLAST of FC923478 vs. ExPASy Swiss-Prot
Match: SPG21_MOUSE (Maspardin OS=Mus musculus GN=Spg21 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.007e-23
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 3
Query:   15 WAPIVSWT-PSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASVGNLLLSDSHITIMDTNDYCATSQQLKDQLSERYSGARQAYMKTGGEFPFLSRPDEVNLHLQLHL 392
            W     W  P+F+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V    + D  +TIMD  D  A S + K+++ + Y  AR+A++KTGG FP+L R  EVNL++Q+HL
Sbjct:  147 WTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHL 273          
BLAST of FC923478 vs. ExPASy Swiss-Prot
Match: SPG21_MACFA (Maspardin OS=Macaca fascicularis GN=SPG21 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.007e-23
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 3
Query:   15 WAPIVSWT-PSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASVGNLLLSDSHITIMDTNDYCATSQQLKDQLSERYSGARQAYMKTGGEFPFLSRPDEVNLHLQLHL 392
            W     W  P+F+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V    + D  +TIMD  D  A S + K+++ + Y  AR+A++KTGG FP+L R  EVNL++Q+HL
Sbjct:  147 WTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHL 273          
BLAST of FC923478 vs. ExPASy Swiss-Prot
Match: SPG21_HUMAN (Maspardin OS=Homo sapiens GN=SPG21 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.007e-23
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 3
Query:   15 WAPIVSWT-PSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASVGNLLLSDSHITIMDTNDYCATSQQLKDQLSERYSGARQAYMKTGGEFPFLSRPDEVNLHLQLHL 392
            W     W  P+F+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V    + D  +TIMD  D  A S + K+++ + Y  AR+A++KTGG FP+L R  EVNL++Q+HL
Sbjct:  147 WTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHL 273          
BLAST of FC923478 vs. ExPASy Swiss-Prot
Match: SPG21_PONAB (Maspardin OS=Pongo abelii GN=SPG21 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 53/127 (41.73%), Postives = 81/127 (63.78%), Query Frame = 3
Query:   15 WAPIVSWT-PSFLLKRYVLTGIHDGPHEPFIADSVDFVVCQVETLSREDLASRLTLTADAASVGNLLLSDSHITIMDTNDYCATSQQLKDQLSERYSGARQAYMKTGGEFPFLSRPDEVNLHLQLHL 392
            W     W  P+F+LK+ VL     GP +P +AD++DF+V ++E+L + +LASRLTL    + V    + D  +TIMD     A S + K+++ + Y  AR+A++KTGG FP+L R  EVNL++Q+HL
Sbjct:  147 WTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFGQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHL 273          
The following BLAST results are available for this feature:
BLAST of FC923478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SPG21_DANRE2.489e-2444.19Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1[more]
SPG21_BOVIN2.752e-2343.31Maspardin OS=Bos taurus GN=SPG21 PE=2 SV=1[more]
SPG21_XENLA3.594e-2341.86Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1[more]
SPG21_MOUSE8.007e-2342.52Maspardin OS=Mus musculus GN=Spg21 PE=1 SV=1[more]
SPG21_MACFA8.007e-2342.52Maspardin OS=Macaca fascicularis GN=SPG21 PE=2 SV=... [more]
SPG21_HUMAN8.007e-2342.52Maspardin OS=Homo sapiens GN=SPG21 PE=1 SV=1[more]
SPG21_PONAB5.190e-2241.73Maspardin OS=Pongo abelii GN=SPG21 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31705E04EF StrClemenN Citrus clementina cDNA clone C31705E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923478 ID=FC923478; Name=FC923478; organism=Citrus clementina; type=EST; length=738bp
CAGCTGCAATGCCATGGGCTCCCATTGTTAGTTGGACACCTTCTTTTTTG
CTTAAACGGTACGTCTTAACAGGAATTCATGATGGCCCTCATGAACCATT
TATTGCAGATTCTGTGGACTTTGTTGTTTGCCAGGTAGAAACACTATCAA
GAGAAGACTTGGCATCCAGGTTGACTTTGACAGCTGATGCTGCTTCGGTT
GGAAATCTTCTGCTTTCAGATTCGCATATCACTATAATGGATACAAATGA
CTATTGTGCAACTTCTCAACAACTGAAAGATCAGCTGAGTGAGAGGTATT
CTGGAGCAAGGCAAGCTTACATGAAAACTGGGGGCGAGTTCCCATTTCTT
TCACGCCCAGATGAAGTCAATTTGCATCTTCAGCTGCACCTTAGACGGGT
TGGGGTTGAAGCTCGGCCAGACTTGGTCAGAGGCATCTCAAGGGATGGTA
GTGGTGGTGATCCTAGTGAAAGCAATGACAGAAAAGAAGATTCTGACAAT
CCTCCTCAAGATGATGGAGGAAACTTCGAAAGTCCATCTACAGAAAGTCA
GTTACCAGCTCCAGAAAGCTCAGAGCCTCACAGTTTAAATGAGTTGCCTC
TCAGCACTGCAAAATGTTGCTTTGCTGGTCAAGGAGATGCGGTAATCTTG
CTGCCATTTCCATTGTTGAGAGAACAATCACGGTCTCTGAAATCCTTTTG
NCACTCACTCTAGTAACCTTGGTTCCTCTTTTGGTGGG
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