FC923480

Overview
NameFC923480
Unique NameFC923480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14157 contig Ccv1_Contig14157:6..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923480 vs. ExPASy Swiss-Prot
Match: Y1515_ARATH (Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.468e-98
Identity = 168/233 (72.10%), Postives = 206/233 (88.41%), Query Frame = 2 
Query:    2 TVGERTTVRQDLANALEIRAFQKITRLSRCDAELLKKEMSETDVPLSYSGGGGPQKSIRKPNLEEILRKFLHFLKPETFQGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWHPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGVSEMMEVHG--EADSSM-VSLSEFLVMFDDPDWGFGIMSTLMKLEAGDRNRHGRHVCSVCRYPIIGSRFR 691
            TVGE+TT+R DLA AL+IRAFQ++TRL +CD E ++KEM + DVP+SYSG GGP KSIRKPNLEEILR+ L  LKP+TFQGA+KAINE+IL++LD++GS RVD+GMFYA++AP+C G  +KRKRVAFDALLW PVNEGS+Q+ K DAV+YIKLLRA+YIPSHG+SEM+EVHG  EA+SS+ V+ ++FL MFDDPDWGFGIMST++KLEA DRNRHG  VCSVCRYP+IGSRF+
Sbjct:  519 TVGEKTTLRPDLATALQIRAFQRVTRLGKCDVEAVRKEMRDNDVPVSYSGSGGPTKSIRKPNLEEILRRLLSSLKPDTFQGAIKAINEKILALLDDSGSGRVDMGMFYAVIAPLCGGHSDKRKRVAFDALLWRPVNEGSSQITKTDAVKYIKLLRAIYIPSHGMSEMLEVHGEEEAESSVTVTFNQFLAMFDDPDWGFGIMSTILKLEANDRNRHGNQVCSVCRYPVIGSRFK 751
[Close]
BLAST of FC923480 vs. ExPASy Swiss-Prot
Match: Y2245_ARATH (Uncharacterized TPR repeat-containing protein At2g32450 OS=Arabidopsis thaliana GN=At2g32450 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.775e-95
Identity = 163/231 (70.56%), Postives = 203/231 (87.88%), Query Frame = 2 
Query:    2 TVGERTTVRQDLANALEIRAFQKITRLSRCDAELLKKEMSETDVPLSYSGGGGPQKSIRKPNLEEILRKFLHFLKPETFQGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWHPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGVSEMMEVHGEA-DSSMVSLSEFLVMFDDPDWGFGIMSTLMKLEAGDRNRHGRHVCSVCRYPIIGSRFR 691
            TVGE+TT+R DLA AL++RAFQ++TRL +CD E L++EM + +VP+SYSG G P KSIR+PNLEEILR+ L+ LKPETFQGA+KAINE+ILSVLD++GS RVDLGMFYA++AP+C G P+KRKRVAFDALLW PVNEGS+Q+ K++AV+YIKLLRA+YIPS G+SEM+EVHGE+ D+S V+ ++FL M+DD +WGFGIMST+ KLE  DRNRHG  VCSVCRYPIIGSRF+
Sbjct:  514 TVGEKTTLRPDLAIALQVRAFQRVTRLWKCDVEALRREMRDNNVPVSYSGNGIPTKSIRRPNLEEILRRLLNVLKPETFQGAIKAINEKILSVLDDSGSGRVDLGMFYAVIAPLCGGHPDKRKRVAFDALLWKPVNEGSSQITKMEAVKYIKLLRAIYIPSQGMSEMLEVHGESDDTSTVTFNQFLEMYDDSEWGFGIMSTVFKLETRDRNRHGNQVCSVCRYPIIGSRFK 744
The following BLAST results are available for this feature:
BLAST of FC923480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1515_ARATH1.468e-9872.10Uncharacterized TPR repeat-containing protein At1g... [more]
Y2245_ARATH5.775e-9570.56Uncharacterized TPR repeat-containing protein At2g... [more]
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Properties
Property NameValue
Genbank descriptionC31705E06EF StrClemenN Citrus clementina cDNA clone C31705E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923480 ID=FC923480; Name=FC923480; organism=Citrus clementina; type=EST; length=721bp
GACTGTTGGTGAGAGGACTACTGTTAGGCAGGATTTAGCGAATGCTCTGG
AGATTAGGGCTTTCCAGAAAATTACTAGGTTGAGTCGATGTGATGCGGAG
CTTCTAAAGAAAGAAATGAGTGAAACTGATGTACCACTGTCTTATTCTGG
AGGTGGTGGTCCTCAGAAATCCATACGTAAGCCTAATTTGGAGGAAATTC
TCCGCAAGTTCCTTCATTTCCTAAAGCCTGAAACTTTTCAAGGGGCTGTC
AAAGCAATAAATGAGAGGATCCTCTCTGTCTTGGATGAAACTGGCTCAGC
CAGGGTAGACTTGGGCATGTTTTATGCTATTCTCGCACCCATTTGCAGTG
GTTCTCCAGAAAAGCGGAAACGAGTTGCCTTTGATGCACTTCTGTGGCAT
CCTGTTAATGAAGGGAGCACTCAGGTTAGAAAGGTTGATGCTGTTAGATA
CATCAAATTATTGAGGGCTGTTTATATTCCTTCTCACGGGGTTAGTGAAA
TGATGGAGGTCCATGGAGAAGCAGACTCTTCAATGGTATCCCTCAGCGAG
TTTCTTGTCATGTTTGATGATCCTGATTGGGGATTTGGCATCATGTCGAC
TCTGATGAAGCTTGAAGCTGGGGATAGGAATCGCCATGGACGTCATGTTT
GCTCAGTTTGTCGCTACCCAATTATTGGCTCTCGCTTCAGGAGATGAAAT
CACATTTTAGTTTATGTAGTC
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