FC923482

Overview
NameFC923482
Unique NameFC923482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14476 contig Ccv1_Contig14476:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923482 vs. ExPASy Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 35/120 (29.17%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  330 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI 689
            A  YA AL D A  + +LE    D+ K+ ++  +E +      P VG++ K ++V E++SS  +  ++A  L +L++  +V ++ ++++EF+++Y+ L  T +  V+S  K+E   L  I
Sbjct:   66 AGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQI 185          
BLAST of FC923482 vs. ExPASy Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 38/120 (31.67%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  330 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI 689
            AS YA+AL D A    +LEA   DV KL R+   E +    A+P +   +K  ++ E++++  +  + A  + +LI+  ++ +V ++L EF+ +++ + GT V  V+S  K+E D L  I
Sbjct:   75 ASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQI 194          
BLAST of FC923482 vs. ExPASy Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 36/120 (30.00%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  330 ASGYAAALLDKALCHSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHI 689
            A  YAAAL D A  +++L+A+  D  K+ +L  + ++    + P V D  K Q++ E  ++     +    L +LI+  ++ M+ D+++EF+ +Y+ L  T +V V+S  K+E   L  I
Sbjct:   69 AGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLESHHLAQI 188          
The following BLAST results are available for this feature:
BLAST of FC923482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATPD_TOBAC1.139e-1229.17ATP synthase delta chain, chloroplastic OS=Nicotia... [more]
ATPD_SPIOL1.139e-1231.67ATP synthase delta chain, chloroplastic OS=Spinaci... [more]
ATPD_PEA6.252e-1130.00ATP synthase delta chain, chloroplastic OS=Pisum s... [more]
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Properties
Property NameValue
Genbank descriptionC31705E08EF StrClemenN Citrus clementina cDNA clone C31705E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923482 ID=FC923482; Name=FC923482; organism=Citrus clementina; type=EST; length=690bp
GACCCAACCCAAGGCCAACGGACAAAAGTTTGGTTTCTTCCATCCGCAAT
TTTGTATCCATGGATACTCTTTCAAGCTCGGTTTCCACCTTCAAATTTGC
AGCTCTTCACTCAACACCTCGAGAATTACATAACTTCAAAGCTCCTCCAA
ACACATCCCAATCTCATCATCAGTTTCATCCACACCAGTCCCACCTCAGC
TCAACCAGACCCAACAAAACTGCCGCTTCTTTCACTCGCAGGAGCTTCTC
TAATAGTTATCCATCGTTAATTTCCTCCTCCGGAACCTCAACTCCCAAGT
CAGCTTCCCCAAATAGCCATCAGAAACCTGCCAGCGGCTACGCTGCAGCC
CTTCTAGACAAAGCTCTATGCCACAGTTCACTTGAAGCTGTCCAAAGGGA
TGTCCTAAAGTTATCAAGGTTGCTCAAGAATGAGCAAATTCAAGCTGTCT
GTGCTGACCCTTTTGTGGGTGATAAAGACAAGGGGCAAATAGTGAAGGAA
CTGTTGAGTAGTTGGAAAGTTAATAGGTATTTGGCGGCTCTGCTGAGGAT
GCTGATTGAGAGAAATAAGGTGGCCATGGTGAGTGATGTTTTGGAGGAAT
TTCAGAGGATCTATGACGACTTGATTGGGACTCGAGTTGTGTTTGTTTCG
TCTGCAAAGAAGATGGAGGAAGATCAACTCTTTCATATTG
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