FC923487

Overview
NameFC923487
Unique NameFC923487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14477 contig Ccv1_Contig14477:1..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923487 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.274e-52
Identity = 89/117 (76.07%), Postives = 98/117 (83.76%), Query Frame = 1
Query:    1 ALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 351
            AL QFN++DF D+S +DGFNV MEFS  S  C R IKCTA+I G+CPNEL+ PGGCN PC VFKTD+YCCNSGNCG T FSKFFKDRCPD YSYPKDD TSTFTCP GT+YKVVFCP
Sbjct:  109 ALNQFNNLDFFDISLVDGFNVAMEFSPTSGGCTRGIKCTADINGQCPNELRAPGGCNNPCTVFKTDQYCCNSGNCGLTNFSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFCP 225          
BLAST of FC923487 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.612e-47
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    4 LKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 351
            L  FN++DF D+S +DGFNVPM+FS  S  C R I CTA+I G+CP+ELK  GGCN PC VFKTD+YCCNSG+CGPT +S+FFK RCPD YSYPKDD  STFTC  GTDY+VVFCP
Sbjct:   87 LNGFNNLDFFDISLVDGFNVPMDFSPTSNGCTRGISCTADINGQCPSELKTQGGCNNPCTVFKTDQYCCNSGSCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFCP 202          
BLAST of FC923487 vs. ExPASy Swiss-Prot
Match: OSMO_TOBAC (Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 4.543e-42
Identity = 76/120 (63.33%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    1 ALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 351
            AL QF+ +DF D+S +DGFN+PM F+  +PS  +   I CTANI GECP EL+VPGGCN PC  F   +YCC  G CGPT FSKFFK RCPD YSYP+DD TSTFTCP G T+Y+V+FCP
Sbjct:  107 ALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCTQGPCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 226          
BLAST of FC923487 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 5.933e-42
Identity = 74/119 (62.18%), Postives = 96/119 (80.67%), Query Frame = 1
Query:    1 ALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNS--GNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 351
            AL QFN++DF D+S +DGFN+PMEFS  S +C+R++ CTA+I G+CPN L+ PGGCN PC VF+T++YCC +  G+C  T +S+FFK RCPD YSYP+DD TSTFTC T T+Y+VVFCP
Sbjct:  107 ALNQFNNLDFYDISLVDGFNIPMEFSPTSSNCHRIL-CTADINGQCPNVLRAPGGCNNPCTVFQTNQYCCTNGQGSCSDTEYSRFFKQRCPDAYSYPQDDPTSTFTC-TNTNYRVVFCP 223          
BLAST of FC923487 vs. ExPASy Swiss-Prot
Match: OS81_SOLCO (Osmotin-like protein OSML81 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.933e-42
Identity = 76/120 (63.33%), Postives = 89/120 (74.17%), Query Frame = 1
Query:    1 ALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 351
            AL QF+++DF D+S +DGFN+PM F+   PS  +   I CTANI GECP  LKVPGGCN PC  F   +YCC  G CGPT  SKFFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:  107 ALDQFSNLDFWDISLVDGFNIPMTFAPTKPSAGKCHAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCTQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 226          
BLAST of FC923487 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.255e-41
Identity = 74/120 (61.67%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    1 ALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 351
            AL QF+++DF D+S +DGFN+PM F+  +PS  +   I CTANI GECP  L+VPGGCN PC  F   +YCC  G CGPT  S+FFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:   99 ALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 218          
BLAST of FC923487 vs. ExPASy Swiss-Prot
Match: OS13_SOLCO (Osmotin-like protein OSML13 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.255e-41
Identity = 74/120 (61.67%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    1 ALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 351
            AL QF+++DF D+S +DGFN+PM F+  +PS  +   I CTANI GECP  L+VPGGCN PC  F   +YCC  G CGPT  S+FFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP
Sbjct:  107 ALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 226          
BLAST of FC923487 vs. ExPASy Swiss-Prot
Match: NP24_SOLLC (Protein NP24 OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.945e-41
Identity = 76/120 (63.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query:    1 ALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP 351
            AL QF+++DF D+S +DGFN+PM F+   PS  +   I CTANI GECP  LKVPGGCN PC  F   +YCC  G CGPT  SKFFK RCPD YSYP+DD TSTFTCP G T+Y+VVFCP
Sbjct:  107 ALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKCHAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCTQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCP 226          
BLAST of FC923487 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.616e-39
Identity = 73/119 (61.34%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    1 ALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSG--NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 351
            AL Q N  DF+D+S +DGFN+PMEFS  +  C R ++CTA I  +CP +LK  GGCN PC V KT+EYCC +G  +CGPT  S+FFK+RCPD YSYP+DD TS FTCP+GT+Y+VVFCP
Sbjct:  110 ALNQPNQ-DFVDISLVDGFNIPMEFSPTNGGC-RNLRCTAPINEQCPAQLKTQGGCNNPCTVIKTNEYCCTNGPGSCGPTDLSRFFKERCPDAYSYPQDDPTSLFTCPSGTNYRVVFCP 226          
BLAST of FC923487 vs. ExPASy Swiss-Prot
Match: OS35_SOLCO (Osmotin-like protein OSML15 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.110e-39
Identity = 72/120 (60.00%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 ALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRV--IKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPT-GTDYKVVFCP 351
            AL QF+++DF D+S IDGFN+PM F   +P   +   I+C ANI GECP  L+VPGGCN PC  F   +YCC  G CGPT  S+FFK RCPD YSYP+DD TSTFTC +  TDYKV+FCP
Sbjct:  108 ALNQFSNLDFWDISVIDGFNIPMSFGPTNPGPGKCHPIQCVANINGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCQSWTTDYKVMFCP 227          
The following BLAST results are available for this feature:
BLAST of FC923487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TLP_ACTDE1.274e-5276.07Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
P21_SOYBN1.612e-4768.97Protein P21 OS=Glycine max PE=1 SV=1[more]
OSMO_TOBAC4.543e-4263.33Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2[more]
OSL3_ARATH5.933e-4262.18Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
OS81_SOLCO5.933e-4263.33Osmotin-like protein OSML81 OS=Solanum commersonii... [more]
TPM1_SOLLC2.255e-4161.67Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]
OS13_SOLCO2.255e-4161.67Osmotin-like protein OSML13 OS=Solanum commersonii... [more]
NP24_SOLLC2.945e-4163.33Protein NP24 OS=Solanum lycopersicum PE=1 SV=2[more]
PRR1_TOBAC1.616e-3961.34Pathogenesis-related protein R major form OS=Nicot... [more]
OS35_SOLCO2.110e-3960.00Osmotin-like protein OSML15 OS=Solanum commersonii... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705F01EF StrClemenN Citrus clementina cDNA clone C31705F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923487 ID=FC923487; Name=FC923487; organism=Citrus clementina; type=EST; length=558bp
GCGTTGAAGCAATTTAATGACATGGATTTCATTGACATGTCCAACATTGA
CGGATTCAATGTTCCCATGGAATTTAGCTCTGTCTCTCCCTCATGCAACC
GCGTGATCAAGTGCACTGCTAACATTCTTGGCGAGTGCCCGAATGAATTG
AAGGTTCCTGGAGGATGTAACGGGCCGTGCCCCGTGTTCAAGACCGACGA
GTACTGTTGCAATTCAGGCAACTGCGGGCCTACAGGTTTCTCCAAGTTTT
TCAAGGATAGGTGCCCGGATGTTTACAGTTACCCTAAGGATGACGCTACC
AGCACATTTACTTGCCCGACTGGGACAGACTACAAGGTTGTATTCTGCCC
CTGAAGCATTTTTTTTCAGGGGTAGAAATGGAAATAGAAAACTATACGAC
ATAGCCTTCTATATCTGTTATAATATTGGAATAAGGACCGTGTGGTCTTC
ACTGCCATAGAGCTGGAGCAGGCACATGTAGTTATGTGCGTGTATGAACT
ATAATTTGTTCGTGAATTAAAAGGAGAATAACTGANAAAAAAAAAAAAAA
AAAAAAAA
back to top