FC923936

Overview
NameFC923936
Unique NameFC923936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923936 vs. ExPASy Swiss-Prot
Match: FPP4_ARATH (Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  406 MDRRSWPWXXXXXXXXXXXXXXXXXXXXXXXXXXXGSQGEQDNYKKPKYVQISVESYSHLTGLENQVKTYEEQVQTMEEQIKELNEKLSAANSEISA 696
            MDR+SWPW                               +Q+N KKP Y+QIS + Y++L GL+++VK+YEE+V  +E+QIK+L+ KLS AN++I A
Sbjct:    1 MDRKSWPWKKKSSEKTATVTEVV----------------DQENGKKPSYIQISFDQYTNLNGLKDEVKSYEEKVTKLEDQIKDLDLKLSTANADIVA 81          
BLAST of FC923936 vs. ExPASy Swiss-Prot
Match: FPP6_ARATH (Filament-like plant protein 6 OS=Arabidopsis thaliana GN=FPP6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 41/109 (37.61%), Postives = 54/109 (49.54%), Query Frame = 1
Query:  406 MDRRSWPWXXXXXXXXXXXXXXXXXXXXXXXXXXXGSQGEQDNYKKPKYVQISVESYSHLTGLEN--------------QVKTYEEQVQTMEEQIKELNEKLSAANSEI 690
            MDRRSWPW                            SQ +++  KKPKYVQISVE Y+H TGLE               QVKTYE QV++ EEQ+K+  E++ A + ++
Sbjct:    1 MDRRSWPWKKKASDKSILVIDSAADASH--------SQIDKEAIKKPKYVQISVEQYTHFTGLEEQIKSYDVQIKGYDVQVKTYENQVESYEEQVKDFEEQIDAYDEKV 101          
The following BLAST results are available for this feature:
BLAST of FC923936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FPP4_ARATH1.526e-1239.18Filament-like plant protein 4 OS=Arabidopsis thali... [more]
FPP6_ARATH1.292e-1137.61Filament-like plant protein 6 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC31710F09EF StrClemenN Citrus clementina cDNA clone C31710F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923936 ID=FC923936; Name=FC923936; organism=Citrus clementina; type=EST; length=696bp
GATTATAATATTTATTATTAACACAGAAGAAGAAACAACAGAAAAAAAAA
AAAAAGAGAGAGTATTATTTCCATTTATTTTTTCAAGCCTTTCGGAAAAG
AAAAATGATAATATTTAAAAGGTGATGGGTTTAGGAGCCTTTGTTTTGCA
ACGTCTTGCCTTTCAAGTGACACCTAAGTCCACAACCACCACCGCCTCCT
CCGCCGGAACAACCACCTCATCCTCATTAGTTTCTCAATAACTAGGACTG
CAAGAGAACGGCGCCTTTCAGATGCTTAACAACAGATCTTCATATCATAT
CTGAATCACTAACAAAAACAAAATTGGTCACTGTAATAACTGAGTTTTAC
TCCAGTTCCGTACGCTTTTATATCCCTTCAGGAAGCTACATTACTCCTGT
TTAAGATGGACCGCCGGAGTTGGCCCTGGAAGAAAAAATCATCATCTGAA
AAAGCTGAGAAGGCAGCTGCTGCTGCATTGGACTCTGTTCTGGCTGCTTC
AGCTTCTGCTGGATCCCAAGGCGAGCAGGACAATTACAAAAAACCAAAAT
ATGTTCAAATTTCTGTGGAATCATATTCACATCTGACTGGTCTGGAGAAT
CAAGTAAAGACATATGAGGAACAAGTTCAGACAATGGAGGAACAGATTAA
AGAATTGAATGAGAAGCTGTCAGCAGCAAATTCAGAGATCTCTGCT
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