FC923937

Overview
NameFC923937
Unique NameFC923937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_SCHPO (Uncharacterized urease accessory protein ureG-like OS=Schizosaccharomyces pombe GN=SPCPB16A4.05c PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.317e-67
Identity = 128/204 (62.75%), Postives = 155/204 (75.98%), Query Frame = 1
Query:   55 GRVYHSHDGLAP---------------HSHEPIYSP-DYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            G  +HSHD  +                HSH+ + +P  Y  R  P    R+F+ RAFT+G+GGPVG+GKTAL+L LC+ L +KYS+  VTNDIFT+ED EFL+RN ALPEERIRA+ETGGCPHAAIRED+S NL  LEEL +    +LLL ESGGDNLAAN+SR+LAD+IIY+IDVSGGDKIPRKGGPGIT++DLL+INKTDLA
Sbjct:   31 GHDHHSHDSSSNSSSEAARLQFIQEHGHSHDAMETPGSYLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKYSIGVVTNDIFTREDQEFLIRNKALPEERIRAIETGGCPHAAIREDVSGNLVALEELQSEFNTELLLVESGGDNLAANYSRDLADFIIYVIDVSGGDKIPRKGGPGITESDLLIINKTDLA 234          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_ANADF (Urease accessory protein ureG OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ureG PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.610e-65
Identity = 123/182 (67.58%), Postives = 142/182 (78.02%), Query Frame = 1
Query:   73 HDGLAPHSHEPIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            HD      H+    P  F  R  P    +   RAFTVG+GGPVG+GKTAL+LALC+ LRD  SL  VTNDIFT+ED EFL+RN ALP ERIRAVETGGCPHAAIRED++ NL  LEEL+   + ++L CESGGDNLAA+FSRELADY IY+IDV+GGDK+PRKGGPGITQADLLV+NKTDLA
Sbjct:    2 HDHSLHSGHDHGLGPGSFHDRGAPHARGDLRRRAFTVGVGGPVGSGKTALVLALCRALRDSRSLGVVTNDIFTREDAEFLVRNDALPAERIRAVETGGCPHAAIREDVTANLLALEELTEAHRPEILFCESGGDNLAAHFSRELADYTIYVIDVAGGDKVPRKGGPGITQADLLVVNKTDLA 183          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_SORC5 (Urease accessory protein ureG OS=Sorangium cellulosum (strain So ce56) GN=ureG PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.685e-65
Identity = 126/184 (68.48%), Postives = 146/184 (79.35%), Query Frame = 1
Query:   67 HSHDGLAPHSHEPIYSPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            H+H+    H+HE    P  FS R  P   R+F+ RAFTVGIGGPVG+GKTAL+LALC+ LRD+  L  VTNDIFT+ED EFL RN ALP ERIRAVETGGCPHAAIREDIS NL  L++L + +   LL+ ESGGDNLAA +SREL DY IY+IDV+GGDK+PRKGGPGITQ+DLLVINKTDLA
Sbjct:   64 HAHEHAHGHTHEHWAHPGLFSERDAP-KDRDFSARAFTVGIGGPVGSGKTALVLALCRALRDRMPLGVVTNDIFTQEDAEFLHRNKALPPERIRAVETGGCPHAAIREDISHNLVALDDLMDHVAPALLIVESGGDNLAAQYSRELVDYTIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLA 246          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_CYTH3 (Urease accessory protein ureG OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ureG PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.320e-59
Identity = 117/170 (68.82%), Postives = 134/170 (78.82%), Query Frame = 1
Query:  112 SPDYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLLKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            SP +F  R      RNF +RAFTVGIGGPVGTGKTA ++ +CK LRDK ++A VTNDIFT ED EFL+RN AL ++RI  VETGGCPHAAIRED+S N+  LEEL       +LL  ESGGDNLAA+FS+EL DY +Y+IDVSGGDKIPRKGGPGITQADLLVINK DLA
Sbjct:   15 SPGHFHHRELIHEKRNFKKRAFTVGIGGPVGTGKTAWLMQICKALRDKMNIAVVTNDIFTSEDAEFLIRNEALSKDRIIGVETGGCPHAAIREDVSQNMYALEELMKRFPDVELLFVESGGDNLAAHFSKELVDYSVYVIDVSGGDKIPRKGGPGITQADLLVINKIDLA 184          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG1_METRJ (Urease accessory protein ureG 1 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.563e-52
Identity = 102/147 (69.39%), Postives = 118/147 (80.27%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTALM  LCK  RD+Y + A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+S    K DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLL++NKTDLA
Sbjct:   10 VGIGGPVGSGKTALMEQLCKRFRDRYEICAITNDIYTKEDARILTVAGALPEERILGVETGGCPHTAIREDASINLAAVAEMSRRFPKLDLVLIESGGDNLAATFSPELADITLYVIDVAGGEKIPRKGGPGITRSDLLIVNKTDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_METNO (Urease accessory protein ureG OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ureG PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.666e-52
Identity = 104/147 (70.75%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTALM  LCK LR +Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+     A DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:   11 VGIGGPVGSGKTALMEGLCKALRARYDLCAITNDIYTKEDARLLTVAGALPEERIMGVETGGCPHTAIREDASINLAAVAEMRRRFPALDLILIESGGDNLAATFSPELADLTLYVIDVAGGEKIPRKGGPGITRSDLLVINKTDLA 157          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PSEU5 (Urease accessory protein ureG OS=Pseudomonas stutzeri (strain A1501) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.013e-51
Identity = 102/153 (66.67%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  163 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            N +   VGIGGPVG+GKTAL LALC+ LRD+Y+LA VTNDI+T+ED +FL+RN AL  ERI  VETGGCPH AIRED SINL  +E+L+      DL++ ESGGDNL+A FS EL+D  IY+IDVS GDK+PRKGGPGI ++DLLVINK DLA
Sbjct:    2 NTQPLRVGIGGPVGSGKTALTLALCQALRDRYNLAVVTNDIYTQEDAQFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVEQLNRRFPGLDLIIVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLA 154          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_METS4 (Urease accessory protein ureG OS=Methylobacterium sp. (strain 4-46) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.323e-51
Identity = 102/147 (69.39%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTALM  LCK LR ++ L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+     + DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA
Sbjct:   11 VGIGGPVGSGKTALMEGLCKALRGRFDLCAITNDIYTKEDARLLTVAGALPEERIMGVETGGCPHTAIREDASINLAAVAEMRRRFPSLDLILIESGGDNLAATFSPELADLTLYVIDVAGGEKIPRKGGPGITRSDLLVINKTDLA 157          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG1_METPB (Urease accessory protein ureG 1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.323e-51
Identity = 100/147 (68.03%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLL-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            VGIGGPVG+GKTALM  LC+  RD+Y + A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+     K DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLL++NKTDLA
Sbjct:   10 VGIGGPVGSGKTALMEQLCRRFRDRYEICAITNDIYTKEDARILTVAGALPEERILGVETGGCPHTAIREDASINLAAVAEMRRRFPKLDLVLIESGGDNLAATFSPELADITLYVIDVAGGEKIPRKGGPGITRSDLLIVNKTDLA 156          
BLAST of FC923937 vs. ExPASy Swiss-Prot
Match: UREG_PSEU2 (Urease accessory protein ureG OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.728e-51
Identity = 101/153 (66.01%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  163 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLLKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA 618
            N +   VGIGGPVG+GKTAL LALC  LRD+Y+LA VTNDI+T+ED +FL+RN AL  ERI  VETGGCPH AIRED SINL  +++L+   +  DL++ ESGGDNL+A FS EL+D  IY+IDVS GDK+PRKGGPGI ++DLLVINK DLA
Sbjct:    2 NSQPLRVGIGGPVGSGKTALTLALCLALRDRYNLAVVTNDIYTREDADFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFEGLDLIIVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLA 154          
The following BLAST results are available for this feature:
BLAST of FC923937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UREG_SCHPO1.317e-6762.75Uncharacterized urease accessory protein ureG-like... [more]
UREG_ANADF1.610e-6567.58Urease accessory protein ureG OS=Anaeromyxobacter ... [more]
UREG_SORC54.685e-6568.48Urease accessory protein ureG OS=Sorangium cellulo... [more]
UREG_CYTH31.320e-5968.82Urease accessory protein ureG OS=Cytophaga hutchin... [more]
UREG1_METRJ1.563e-5269.39Urease accessory protein ureG 1 OS=Methylobacteriu... [more]
UREG_METNO2.666e-5270.75Urease accessory protein ureG OS=Methylobacterium ... [more]
UREG_PSEU51.013e-5166.67Urease accessory protein ureG OS=Pseudomonas stutz... [more]
UREG_METS41.323e-5169.39Urease accessory protein ureG OS=Methylobacterium ... [more]
UREG1_METPB1.323e-5168.03Urease accessory protein ureG 1 OS=Methylobacteriu... [more]
UREG_PSEU21.728e-5166.01Urease accessory protein ureG OS=Pseudomonas syrin... [more]

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Properties
Property NameValue
Genbank descriptionC31710F10EF StrClemenN Citrus clementina cDNA clone C31710F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923937 ID=FC923937; Name=FC923937; organism=Citrus clementina; type=EST; length=618bp
ACCGATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGAAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGACTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGCTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGATCTTCTGGTGATA
AACAAAACTGACCTTGCT
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