FC923938

Overview
NameFC923938
Unique NameFC923938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923938_ssr23 microsatellite FC923938_ssr23:23..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10310 contig Ccv1_Contig10310:71..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923938 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.706e-67
Identity = 126/209 (60.29%), Postives = 144/209 (68.90%), Query Frame = 2
Query:   95 MAGRYDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFVTYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTE 718
            MA RYD NPF +EEEVNPF+                      N+  VPPA+NSRLSPLP EP GF++ R   I +                      +RREQD++RKE+AAARAGIV+E KNWPPFFP+IHHDIANEIP+HLQRLQYV F TYLGL +CL WNI+AVTTAWIKGEGV IW LA+IYFIAGVPG Y LWYRPLYRAFRT+
Sbjct:    1 MANRYDPNPFAEEEEVNPFA----------------------NARGVPPASNSRLSPLPPEPVGFDYGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFRTD 187          
BLAST of FC923938 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.680e-65
Identity = 125/208 (60.10%), Postives = 141/208 (67.79%), Query Frame = 2
Query:   95 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFVTYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTE 718
            MAGRYD NPFDEE+VNPFS+P                       S   ATNSR +PL  + A +N+     +DIP                     R+REQ+VRRKEEA ARAGIV+EEKNWPPFFPIIHHDI NEIPIHL+ LQYVAF + LGL +CL WN+V+VT AWIKGEGVKIWFLAIIYFIAGVPGAY LWYRPLYRAFRT+
Sbjct:    1 MAGRYDPNPFDEEQVNPFSNPR----------------------SAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEKNWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFRTD 186          
BLAST of FC923938 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.314e-64
Identity = 121/208 (58.17%), Postives = 140/208 (67.31%), Query Frame = 2
Query:   95 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFVTYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTE 718
            MAGRYD NPFDE++VNPF+                         SVPPA+NSR+ PLPHEP GF  +R A +DIP                      +RE ++RR+EEAA+RAGIV+EEKNWPPFFPIIHHDI+NEIPIHLQR+QY+AF + LGL  CL WNI+A T AWIKG GV IW LAIIYFI+GVPGAY LWYRPLY A RTE
Sbjct:    1 MAGRYDRNPFDEDDVNPFA-----------------------GGSVPPASNSRMPPLPHEP-GFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTE 184          
BLAST of FC923938 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.637e-63
Identity = 120/209 (57.42%), Postives = 145/209 (69.38%), Query Frame = 2
Query:   95 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPP-ATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFVTYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTE 718
            MAGRYDSNPF+E++VNPFS+ A R                 N  +VP  ++NSRLSPLP EPA F     A +DIP                      +RE++++R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAF ++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAY LWYRPLY A RT+
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTD 204          
BLAST of FC923938 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.637e-63
Identity = 120/209 (57.42%), Postives = 145/209 (69.38%), Query Frame = 2
Query:   95 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPP-ATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFVTYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTE 718
            MAGRYDSNPF+E++VNPFS+ A R                 N  +VP  ++NSRLSPLP EPA F     A +DIP                      +RE++++R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAF ++LGL  CL WN++AVT+AW+KGEGVKIW LAIIYFI+GVPGAY LWYRPLY A RT+
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQA-RGKAGGQPSYGGGAFYMPNPRNVPSMSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTD 204          
BLAST of FC923938 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.444e-63
Identity = 123/211 (58.29%), Postives = 143/211 (67.77%), Query Frame = 2
Query:   95 MAGRYDSNPFDEE-EVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFER--DAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFVTYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTE 718
            M GRYD N FDE+ EVNPF++P                       SVP A+NSRLSPLP EPAGF + R  D P+D P                     RRREQD++RK++AAARAGIV+E KNWP FFP+IHHDIANEI + LQRLQY+AF TYLGL + L WNI+AVTTAWIKGEGV IW LA+IYFI+GVPG Y LWYRPLYRAFR++
Sbjct:    1 MGGRYDRNTFDEQDEVNPFANPG----------------------SVPAASNSRLSPLPPEPAGFGYGRTVDIPLDRPGSGAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSD 189          
BLAST of FC923938 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.600e-60
Identity = 123/214 (57.48%), Postives = 142/214 (66.36%), Query Frame = 2
Query:   95 MAGR--YDSNPFDE---EEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSA-SVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFVTYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTE 718
            MAGR  YD NPF+E   +EVNPF+D A +               TT S  S PPAT+  LSPLP EPA F  +   P+DIP                      RRE++++R+EEAAARAGIVLE+KNWPPFFPIIH+DI NEIP+HLQR QYVAF + LGL +CL WNI+ VT AWIKGEG KIWFLA+IYFI G PGAY LWYRPLYRA R E
Sbjct:    1 MAGRSRYD-NPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATH--LSPLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGIVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNE 211          
BLAST of FC923938 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.089e-60
Identity = 118/205 (57.56%), Postives = 141/205 (68.78%), Query Frame = 2
Query:  104 RYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFVTYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTE 718
            RY S+ FD+ E+NPF++P                       SVP AT S+LSPLP EP    ++R A +DIP                     +RREQ+++RKE+A A+AGIV+EEKNWPPFFP+IHHDI+NEIPIHLQR+QYVAF + LGL VCLLWNIVAVTTAWIKGEG  IWFLAIIYFI+GVPGAY +WYRPLYRA RT+
Sbjct:    3 RYQSHSFDDGEINPFANPT----------------------SVPAAT-SKLSPLPPEP----YDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTD 180          
BLAST of FC923938 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.956e-58
Identity = 112/205 (54.63%), Postives = 135/205 (65.85%), Query Frame = 2
Query:  104 RYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFVTYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTE 718
            R+D NPF +EE+NPF+                      N  SVPPA+NS L PLP EP    ++R A +DIP                     +R+EQ+++R+E+A AR G+V+EEKNWP FFP+IHHDI NEIPIHLQ++QYVAF T LGL  CLLWNIVAVT AWIKGEG  IW L+IIYF+AGVPGAY LWYRPLYRA RT+
Sbjct:    3 RHDPNPFADEEINPFA----------------------NHTSVPPASNSYLKPLPPEP----YDRGATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTD 181          
BLAST of FC923938 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.357e-58
Identity = 111/208 (53.37%), Postives = 137/208 (65.87%), Query Frame = 2
Query:   95 MAGRYDSNPFDEEEVNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFVTYLGLFVCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYGLWYRPLYRAFRTE 718
            MAG++  N F++++VNPF+                         SVPPA NSRL PL HEPA F       +DIP                      +RE++++RKEEAAA+AGIV+E+KNWPPFFP+IHH+I+NEIPIHLQR+QY+AF ++LGL  CL WNI+A TTAW+KGEGV IW LAIIYFI+GVPGAY LWYRPLY A RTE
Sbjct:    1 MAGKHGRNGFEDDDVNPFA-----------------------GGSVPPANNSRLPPLSHEPADFY-----NVDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTE 180          
The following BLAST results are available for this feature:
BLAST of FC923938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SCAM3_ARATH6.706e-6760.29Secretory carrier-associated membrane protein 3 OS... [more]
SCAM_PEA3.680e-6560.10Secretory carrier-associated membrane protein OS=P... [more]
SCAM2_ORYSJ5.314e-6458.17Secretory carrier-associated membrane protein 2 OS... [more]
SCAM1_ORYSJ2.637e-6357.42Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI2.637e-6357.42Putative secretory carrier-associated membrane pro... [more]
SCAM5_ARATH3.444e-6358.29Secretory carrier-associated membrane protein 5 OS... [more]
SCAM4_ORYSJ1.600e-6057.48Secretory carrier-associated membrane protein 4 OS... [more]
SCAM1_ARATH2.089e-6057.56Secretory carrier-associated membrane protein 1 OS... [more]
SCAM2_ARATH1.956e-5854.63Secretory carrier-associated membrane protein 2 OS... [more]
SCAM3_ORYSJ4.357e-5853.37Secretory carrier-associated membrane protein 3 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31710F11EF StrClemenN Citrus clementina cDNA clone C31710F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923938 ID=FC923938; Name=FC923938; organism=Citrus clementina; type=EST; length=726bp
GAGTCCAACAACTTTCATATCATCTCTCTCTCTTTAAATCGTTCTCCGAT
TTCTCTCAAGATTTGGTGAAAAAGTTAAGTTATAACCGCTTGTGATGGCC
GGCCGTTACGACAGCAATCCCTTCGATGAAGAGGAAGTGAATCCTTTCTC
CGACCCAGCTGTTAGGGGGAAAAGCTCGGGCCAATCAAGGTTTGGTGGAG
GTGGATTTTTTACAACAAACAGTGCAAGTGTTCCACCTGCAACTAATTCA
AGGCTTTCACCTCTTCCTCATGAACCAGCTGGTTTCAATTTTGAACGTGA
TGCGCCTATTGACATTCCTCTTGATACAGCTGCGGATTTGAAGAAGAAAG
AGAAGGAACTTCAAGCTAAGGAGGCTGAATTAAGAAGGCGGGAGCAGGAT
GTAAGAAGGAAAGAAGAAGCTGCAGCACGAGCTGGAATTGTTCTTGAGGA
GAAAAACTGGCCACCATTTTTCCCCATTATTCATCATGACATTGCAAACG
AAATACCAATTCATCTACAAAGGCTGCAATATGTTGCATTTGTAACATAT
TTAGGATTGTTTGTGTGTCTCCTGTGGAACATCGTAGCTGTTACCACAGC
ATGGATCAAAGGCGAAGGTGTAAAAATCTGGTTTCTCGCCATTATTTACT
TCATAGCAGGAGTTCCAGGTGCTTATGGGCTGTGGTATCGTCCACTCTAT
CGTGCTTTCAGGACTGAAAAGTGCAT
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