FC923939

Overview
NameFC923939
Unique NameFC923939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923939 vs. ExPASy Swiss-Prot
Match: B3GTJ_ARATH (Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 1.362e-75
Identity = 133/184 (72.28%), Postives = 158/184 (85.87%), Query Frame = 3
Query:    3 AERMSVRKSWMQHKLITSSKVVARLFVALHGRKEVNLDLKKEAEYFGDIVIVPYMDAYDLVVLKTVAICEYGVRTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTXXXXXXXXXXXXANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMCVEKFNN 554
            AERM+VR+SWMQHKL+ SSKVVAR FVALH RKEVN++LKKEAE+FGDIVIVPYMD+YDLVVLKTVAICEYG   +AA +IMKCDDDTF++VDAV+ EA+K   D+SLYIGN+NYYH+PLR GKW+VT            ANGPGYI+S+DI++FIV +FEKHKLR+FKMEDVS+GM VE+FNN
Sbjct:  446 AERMAVRRSWMQHKLVKSSKVVARFFVALHSRKEVNVELKKEAEFFGDIVIVPYMDSYDLVVLKTVAICEYGAHQLAAKFIMKCDDDTFVQVDAVLSEAKKTPTDRSLYIGNINYYHKPLRQGKWSVTYEEWPEEDYPPYANGPGYILSNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFNN 629          
BLAST of FC923939 vs. ExPASy Swiss-Prot
Match: B3GTH_ARATH (Probable beta-1,3-galactosyltransferase 17 OS=Arabidopsis thaliana GN=B3GALT17 PE=2 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 6.761e-75
Identity = 138/183 (75.41%), Postives = 155/183 (84.70%), Query Frame = 3
Query:    3 AERMSVRKSWMQHKLITSSKVVARLFVALHGRKEVNLDLKKEAEYFGDIVIVPYMDAYDLVVLKTVAICEYGVRTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTXXXXXXXXXXXXANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMCVEKFN 551
            AERM+VRKSWMQ KL+ SSKVVAR FVALH RKEVN+DLKKEAEYFGDIVIVPYMD YDLVVLKTVAICEYGV TVAA Y+MKCDDDTF+RVDAV++EA KV+  +SLYIGN+N+ H+PLR GKWAVT            ANGPGYI+S D+A+FIV DFE+ +LRLFKMEDVSMGM VEKFN
Sbjct:  439 AERMAVRKSWMQQKLVRSSKVVARFFVALHARKEVNVDLKKEAEYFGDIVIVPYMDHYDLVVLKTVAICEYGVNTVAAKYVMKCDDDTFVRVDAVIQEAEKVKGRESLYIGNINFNHKPLRTGKWAVTFEEWPEEYYPPYANGPGYILSYDVAKFIVDDFEQKRLRLFKMEDVSMGMWVEKFN 621          
BLAST of FC923939 vs. ExPASy Swiss-Prot
Match: B3GTI_ARATH (Probable beta-1,3-galactosyltransferase 18 OS=Arabidopsis thaliana GN=B3GALT18 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 9.764e-74
Identity = 133/184 (72.28%), Postives = 154/184 (83.70%), Query Frame = 3
Query:    3 AERMSVRKSWMQHKLITSSKVVARLFVALHGRKEVNLDLKKEAEYFGDIVIVPYMDAYDLVVLKTVAICEYGVRTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTXXXXXXXXXXXXANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMCVEKFNN 554
            +ERM+VRKSWMQH LITS+KVVAR FVALHGRKEVN++LKKEAEYFGDIV+VPYMD+YDLVVLKTVAICE+G    +A YIMKCDDDTF+++ AV+ E +KV E +SLYIGNMNYYH+PLR GKWAVT            ANGPGY++SSDIA+FIV  FE+HKLRLFKMEDVS+GM VE F N
Sbjct:  437 SERMAVRKSWMQHVLITSAKVVARFFVALHGRKEVNVELKKEAEYFGDIVLVPYMDSYDLVVLKTVAICEHGALAFSAKYIMKCDDDTFVKLGAVINEVKKVPEGRSLYIGNMNYYHKPLRGGKWAVTYEEWPEEDYPPYANGPGYVLSSDIARFIVDKFERHKLRLFKMEDVSVGMWVEHFKN 620          
BLAST of FC923939 vs. ExPASy Swiss-Prot
Match: B3GTK_ARATH (Probable beta-1,3-galactosyltransferase 20 OS=Arabidopsis thaliana GN=B3GALT20 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.413e-64
Identity = 120/183 (65.57%), Postives = 146/183 (79.78%), Query Frame = 3
Query:    3 AERMSVRKSWMQHKLITSSKVVARLFVALHGRKEVNLDLKKEAEYFGDIVIVPYMDAYDLVVLKTVAICEYGVRTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRHGKWAVTXXXXXXXXXXXXANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMCVEKFN 551
            +ERM+VRK+WMQH  I SS VVAR FVAL+ RKEVN  LKKEAEYFGDIVI+P+MD Y+LVVLKT+AICE+GV+ V A YIMKCDDDTFIRV++++K+   V  +KSLY+GN+N  HRPLR GKW VT            ANGPGYI+SS+IA++IV+   +HKLRLFKMEDVSMG+ VE+FN
Sbjct:  450 SERMAVRKTWMQHPSIKSSDVVARFFVALNPRKEVNAMLKKEAEYFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAPYIMKCDDDTFIRVESILKQIDGVSPEKSLYMGNLNLRHRPLRTGKWTVTWEEWPEAVYPPYANGPGYIISSNIAKYIVSQNSRHKLRLFKMEDVSMGLWVEQFN 632          
BLAST of FC923939 vs. ExPASy Swiss-Prot
Match: B3GTG_ARATH (Probable beta-1,3-galactosyltransferase 16 OS=Arabidopsis thaliana GN=B3GALT16 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.080e-36
Identity = 72/183 (39.34%), Postives = 115/183 (62.84%), Query Frame = 3
Query:    9 RMSVRKSWMQHKLITSSKVVARLFVALHGRKEVNLDLKKEAEYFGDIVIVPYMDAYDLVVLKTVAICEYGVRTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRH--GKWAVTXXXXXXXXXXXXANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMCVEKFN 551
            RM++R+SWMQ++ + S KV  R  + LH  ++VNL++ +E++ +GDI  +P++D Y L+ LKTVA+C  G + + A YIMK DDD F+R+D ++    + R   +L  G +++   P R    KW +             A+GPGYI+S DIA+F+V    +  L LFK+EDV+MG+ +++FN
Sbjct:  387 RMALRRSWMQYEAVRSGKVAVRFLIGLHTNEKVNLEMWRESKAYGDIQFMPFVDYYGLLSLKTVALCILGTKVIPAKYIMKTDDDAFVRIDELLSSLEE-RPSSALLYGLISFDSSPDREQGSKWFIPKEEWPLDSYPPWAHGPGYIISHDIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFN 568          
BLAST of FC923939 vs. ExPASy Swiss-Prot
Match: B3GTF_ARATH (Beta-1,3-galactosyltransferase 15 OS=Arabidopsis thaliana GN=B3GALT15 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.290e-33
Identity = 71/179 (39.66%), Postives = 109/179 (60.89%), Query Frame = 3
Query:    9 RMSVRKSWMQHKLITSSKVVARLFVALHGRKEVNLDLKKEAEYFGDIVIVPYMDAYDLVVLKTVAICEYGVRTVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRH--GKWAVTXXXXXXXXXXXXANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMCV 539
            RM+VR++WMQ+  + S +V  R FV LH    VNL+L  EA  +GD+ ++P++D Y L+  KT+AIC +G    +A +IMK DDD F+RVD V+         + L  G +N   +P+R+   KW ++            A+GPGYIVS DIA+ +   F++  L++FK+EDV+MG+ +
Sbjct:  408 RMAVRRTWMQYDDVRSGRVAVRFFVGLHKSPLVNLELWNEARTYGDVQLMPFVDYYSLISWKTLAICIFGTEVDSAKFIMKTDDDAFVRVDEVLLSLSMTNNTRGLIYGLINSDSQPIRNPDSKWYISYEEWPEEKYPPWAHGPGYIVSRDIAESVGKLFKEGNLKMFKLEDVAMGIWI 586          
BLAST of FC923939 vs. ExPASy Swiss-Prot
Match: B3GT5_PANTR (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan troglodytes GN=B3GALT5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 48/186 (25.81%), Postives = 87/186 (46.77%), Query Frame = 3
Query:    3 AERMSVRKSWMQHKLITSSKVVARLFVALHGRKEVNLDLKKEAEYFGDIVIVPYMDAYDLVVLKTVAICEYGVR-TVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRH--GKWAVTXXXXXXXXXXXXANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMCVEKFN 551
            AERM++R++W + + +   ++     +          ++ +E++  GDI+   ++D Y  + LKT+   E+  R    A ++MK D D FI VD + +   K       + G +     P+R    KW V+             +G GY+ S D+A  +    E   +   K+EDV +G+C+E+ N
Sbjct:   71 AERMAIRQTWGKERTVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVYNVSE--SVPYIKLEDVFVGLCLERLN 254          
BLAST of FC923939 vs. ExPASy Swiss-Prot
Match: B3GT5_PANPA (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan paniscus GN=B3GALT5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 48/186 (25.81%), Postives = 87/186 (46.77%), Query Frame = 3
Query:    3 AERMSVRKSWMQHKLITSSKVVARLFVALHGRKEVNLDLKKEAEYFGDIVIVPYMDAYDLVVLKTVAICEYGVR-TVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRH--GKWAVTXXXXXXXXXXXXANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMCVEKFN 551
            AERM++R++W + + +   ++     +          ++ +E++  GDI+   ++D Y  + LKT+   E+  R    A ++MK D D FI VD + +   K       + G +     P+R    KW V+             +G GY+ S D+A  +    E   +   K+EDV +G+C+E+ N
Sbjct:   71 AERMAIRQTWGKERTVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDGYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVYNVSE--SVPYIKLEDVFVGLCLERLN 254          
BLAST of FC923939 vs. ExPASy Swiss-Prot
Match: B3GT5_HUMAN (Beta-1,3-galactosyltransferase 5 OS=Homo sapiens GN=B3GALT5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 47/186 (25.27%), Postives = 87/186 (46.77%), Query Frame = 3
Query:    3 AERMSVRKSWMQHKLITSSKVVARLFVALHGRKEVNLDLKKEAEYFGDIVIVPYMDAYDLVVLKTVAICEYGVR-TVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRH--GKWAVTXXXXXXXXXXXXANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMCVEKFN 551
            AERM++R++W + +++   ++     +          ++ +E++  GDI+   ++D Y  + LKT+   E+  R    A ++MK D D FI VD + +   K       + G +     P+R    KW V+             +G GY+ S D+A  +        +   K+EDV +G+C+E+ N
Sbjct:   71 AERMAIRQTWGKERMVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVYN--VSKSVPYIKLEDVFVGLCLERLN 254          
BLAST of FC923939 vs. ExPASy Swiss-Prot
Match: B3GT5_GORGO (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Gorilla gorilla gorilla GN=B3GALT5 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.529e-13
Identity = 48/186 (25.81%), Postives = 86/186 (46.24%), Query Frame = 3
Query:    3 AERMSVRKSWMQHKLITSSKVVARLFVALHGRKEVNLDLKKEAEYFGDIVIVPYMDAYDLVVLKTVAICEYGVR-TVAANYIMKCDDDTFIRVDAVMKEARKVREDKSLYIGNMNYYHRPLRH--GKWAVTXXXXXXXXXXXXANGPGYIVSSDIAQFIVADFEKHKLRLFKMEDVSMGMCVEKFN 551
            AERM++R++W + + +   ++     +          ++ +E+   GDI+   ++D Y  + LKT+   E+  R    A ++MK D D FI VD + +   K       + G +     P+R    KW V+             +G GY+ S D+A  +    E   +   K+EDV +G+C+E+ N
Sbjct:   71 AERMAIRQTWGKERTVKGKQLKTFFLLGTTSSAAETKEVDQESRRHGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQVYNVSE--SVPYIKLEDVFVGLCLERLN 254          
The following BLAST results are available for this feature:
BLAST of FC923939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
B3GTJ_ARATH1.362e-7572.28Probable beta-1,3-galactosyltransferase 19 OS=Arab... [more]
B3GTH_ARATH6.761e-7575.41Probable beta-1,3-galactosyltransferase 17 OS=Arab... [more]
B3GTI_ARATH9.764e-7472.28Probable beta-1,3-galactosyltransferase 18 OS=Arab... [more]
B3GTK_ARATH1.413e-6465.57Probable beta-1,3-galactosyltransferase 20 OS=Arab... [more]
B3GTG_ARATH8.080e-3639.34Probable beta-1,3-galactosyltransferase 16 OS=Arab... [more]
B3GTF_ARATH1.290e-3339.66Beta-1,3-galactosyltransferase 15 OS=Arabidopsis t... [more]
B3GT5_PANTR1.483e-1325.81Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan... [more]
B3GT5_PANPA1.483e-1325.81Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan... [more]
B3GT5_HUMAN1.483e-1325.27Beta-1,3-galactosyltransferase 5 OS=Homo sapiens G... [more]
B3GT5_GORGO2.529e-1325.81Beta-1,3-galactosyltransferase 5 (Fragment) OS=Gor... [more]

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Properties
Property NameValue
Genbank descriptionC31710F12EF StrClemenN Citrus clementina cDNA clone C31710F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923939 ID=FC923939; Name=FC923939; organism=Citrus clementina; type=EST; length=554bp
TTGCTGAGCGGATGTCTGTCAGGAAGTCGTGGATGCAACACAAGTTAATA
ACATCTTCCAAAGTAGTGGCTCGGCTTTTCGTTGCACTGCATGGAAGAAA
GGAAGTAAATTTGGATCTAAAGAAAGAAGCAGAGTATTTTGGTGATATTG
TCATAGTTCCTTACATGGATGCTTATGACCTTGTTGTACTAAAGACTGTT
GCAATCTGTGAATATGGGGTTCGTACAGTGGCTGCAAATTATATCATGAA
GTGTGACGATGATACATTTATTAGGGTGGATGCTGTAATGAAGGAAGCAA
GGAAAGTCCGTGAAGACAAGAGCCTATATATTGGGAACATGAACTACTAC
CACAGGCCCCTCCGCCATGGTAAATGGGCAGTGACGTACGAGGAGTGGCC
GGAGGAAGAATATCCACCATACGCCAATGGTCCAGGATACATTGTGTCTT
CTGACATCGCACAGTTTATAGTAGCTGACTTTGAAAAACACAAGTTGAGA
TTGTTCAAGATGGAAGATGTGAGCATGGGAATGTGCGTGGAAAAGTTCAA
CAAT
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