FC923941

Overview
NameFC923941
Unique NameFC923941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14570 contig Ccv1_Contig14570:1..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923941 vs. ExPASy Swiss-Prot
Match: XL3_GOSHI (UPF0497 membrane protein xl3 OS=Gossypium hirsutum GN=XL3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.490e-19
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1
Query:  172 IEMDVQKIEAFVRVXXXXXXXXXXXXVGLDTQSKYIFYVDRKITYKELHALGALVYVASAAAGYNLLQLGRSVFVSRYLGNSKGSYRYLAWVSYLLDQ 465
            +E+ +QKIEA +R+            +GLD+Q+K IFYV +K ++K+L AL  L+Y+ S AA YNLLQL  S F + Y G S  SY YLAW+ Y+LDQ
Sbjct:    1 MELSIQKIEALIRLSTIVMLVLTACLIGLDSQTKVIFYVQKKASFKDLRALVGLLYITSLAAAYNLLQLCCSSFSASYKGTSLQSYAYLAWLRYILDQ 98          
BLAST of FC923941 vs. ExPASy Swiss-Prot
Match: U4978_SOYBN (UPF0497 membrane protein 8 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  172 IEMDVQKIEAFVRVXXXXXXXXXXXXVGLDTQSKYIFY-VDRKITYKELHALGALVYVASAAAGYNLLQLGRSVFVSRYLGNSKGSYRYLAWVSYLLDQVN-FPFLKLNSVKLRSYLKKILXSKSIFW 549
            +++ + + E  +RV            V LDTQ+K +F  +++K TYK+L+AL  LVYV  AAAGYNLL L +    SR   N KGSY  +AW+ + LDQ+  +     N+  + + +  I  S++  W
Sbjct:    1 MKLGMARGEVCLRVSAILVLVLTACLVALDTQTKVVFVSIEKKATYKDLNALKILVYVTCAAAGYNLLLLCKHSIWSR--KNFKGSYLCMAWICFSLDQIAVYMTFAANTATMGAAVLAISGSEAFQW 126          
BLAST of FC923941 vs. ExPASy Swiss-Prot
Match: U497D_VITVI (UPF0497 membrane protein 13 OS=Vitis vinifera GN=GSVIVT00031388001 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.567e-12
Identity = 45/132 (34.09%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  178 MDVQKIEAFVRVXXXXXXXXXXXXVGLDTQSKYIFYVDRKI-TYKELHALGALVYVASAAAGYNLLQLGRSVFVSRYLGN-SKGSYRYLAWVSYLLDQVN-FPFLKLNSVKLRSYLKKILXSKSIFWKQKHN 564
            + + + EAF+R+            +G DTQ+K +F   +K  T+++L AL  +VYV S AAGYNLLQLGR    ++  G     SY  L WV +LLDQ   +     N+  L++ +  +    S+ W +  N
Sbjct:   26 ISLARAEAFLRLFAILVLVLTACLLGFDTQTKLLFSTIKKTATFRDLGALQVVVYVDSVAAGYNLLQLGRGFISAKLKGKLINVSYVTLPWVCFLLDQAAVYTVFSANTAALQASIIAVTGESSLQWMKVCN 157          
The following BLAST results are available for this feature:
BLAST of FC923941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
XL3_GOSHI2.490e-1947.96UPF0497 membrane protein xl3 OS=Gossypium hirsutum... [more]
U4978_SOYBN2.948e-1235.94UPF0497 membrane protein 8 OS=Glycine max PE=2 SV=... [more]
U497D_VITVI6.567e-1234.09UPF0497 membrane protein 13 OS=Vitis vinifera GN=G... [more]
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Properties
Property NameValue
Genbank descriptionC31710G03EF StrClemenN Citrus clementina cDNA clone C31710G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923941 ID=FC923941; Name=FC923941; organism=Citrus clementina; type=EST; length=564bp
GATAGAAAAAGTTCATAATTATCATTATATATATTTTCTTAATCAATGAA
TCCTCTTGGACTCTGGAATGACAGTACTTTTGTTTACAGAGTGTATGTAG
CGCAAGTTGCATGCAGAACCAGCTCACAAATATCAAAGTGCTTGGCGGCT
GTAGAGAGATAAGCAATAGAAATTGAAATGGATGTACAAAAAATTGAGGC
TTTTGTAAGGGTTTGCGCAGCGCTGCTCCTGCTCTTGACAGCATGTTTAG
TTGGCTTGGATACTCAATCCAAGTATATTTTTTACGTCGACAGAAAAATT
ACTTACAAGGAATTGCATGCTCTCGGAGCTTTGGTTTACGTTGCTTCAGC
TGCTGCGGGTTATAATCTTCTTCAACTGGGTAGAAGTGTCTTCGTGAGCC
GCTATCTGGGAAACTCAAAGGGGTCTTACAGATATCTGGCTTGGGTTTCT
TATTTGTTGGACCAGGTAAATTTCCCTTTCCTCAAGTTAAATTCTGTTAA
ATTGAGATCATACCTAAAGAAAATATTGTGNTCGAAATCAATTTTTTGGA
AGCAAAAACACAAC
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