FC923942

Overview
NameFC923942
Unique NameFC923942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14571 contig Ccv1_Contig14571:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923942 vs. ExPASy Swiss-Prot
Match: TIPRL_DICDI (TIP41-like protein OS=Dictyostelium discoideum GN=tiprl PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 64/173 (36.99%), Postives = 100/173 (57.80%), Query Frame = 1
Query:  196 RRGLRIRGWEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQEGLPPVEVPAAAQWKFRSKPFE-QLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADXGVSLL 711
            + G+ I  W I + K  IL S+  E WE++L  N LPEMV+G + + L + +    I FN  DAL    +     ++V ++ +W+  +K FE Q+   +++TF++PY G+    + T  H    N +    L +E+  EKID+  L   +PILF+D+V+LYEDELAD G S+L
Sbjct:   13 KNGIEIGDWVIHTSKNPILKSTEKEEWEKELVLNGLPEMVYGNNFIRLSNEKRDITIVFNCMDALKMLDKVADQSIKVSSSKKWEEINKGFEGQIEKSFEWTFSSPYTGT----ILTRGH-CYSNFEKPIGL-FENTTEKIDIEKLKRPDPILFFDDVLLYEDELADNGSSML 179          
BLAST of FC923942 vs. ExPASy Swiss-Prot
Match: TIPRL_XENLA (TIP41-like protein OS=Xenopus laevis GN=tiprl PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 58/167 (34.73%), Postives = 92/167 (55.09%), Query Frame = 1
Query:  220 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQEGLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADXGVSLL 711
            W++ + K  I+ S+ VE+  +++    LPEM+FGE+ L ++H  SG  I FNA DAL   K      V+V  A +W   +  S+  ++++  YD+T+TT Y G+               L  +  L+     E+I+   L +KE I+F++EV+L+EDEL D GVS L
Sbjct:   18 WQLTAIKTHIMKSADVEKLAEEMSMPCLPEMMFGENVLRIQHT-SGFGIEFNANDALKVVKNSQ-GSVKVACAEEWQESRSDSEHSKEVVKPYDWTYTTDYKGTL--------------LGDNMKLNVVPTTERINTEKLKAKEQIMFFEEVLLFEDELHDHGVSSL 168          
BLAST of FC923942 vs. ExPASy Swiss-Prot
Match: TIP41_YEAST (Type 2A phosphatase activator TIP41 OS=Saccharomyces cerevisiae GN=TIP41 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 60/188 (31.91%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  205 LRIRGWEIESRKRSILNSSSVERWE-QKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQEGLPPVEVPAAAQWKFRSKPFEQ------------------LILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADXGVSLL 711
            + I  W I SRK+ ILNS  ++ WE +KL+   LPEM+FG + + +++ +    I FNA DAL   + +    + V  +  W   SK  +                   +I  YD+T+TT Y G+E+                  S    D  +K+ +  LA  + ILFYD+++L+EDELAD G+S+L
Sbjct:   92 ISINDWTISSRKKPILNSQELDIWENEKLKGLTLPEMIFGNNYIRIENSKQHWSIEFNALDALKEVQLQD-SGIRVAYSNDW-INSKKRQNSTNGAQRFTNDVNDDSLNIIHKYDWTYTTRYKGTES---------------SPESKFRLDNDQKLPLDKLAVHDKILFYDDMILFEDELADNGISIL 262          
BLAST of FC923942 vs. ExPASy Swiss-Prot
Match: TIPRL_XENTR (TIP41-like protein OS=Xenopus tropicalis GN=tiprl PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 54/167 (32.34%), Postives = 91/167 (54.49%), Query Frame = 1
Query:  220 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQEGLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADXGVSLL 711
            W++ + K  I+ S+  E+  +++    LPEM+FG++ L ++H  SG  I FNA DAL   K      ++V  A +W   +  S+  ++++  YD+T+TT Y G+               L  +  L+     +KI+   L ++E I+F++EV+L+EDEL D GVS L
Sbjct:   18 WQLTAIKTHIMKSADAEKLAEEMSMPCLPEMMFGDNVLRIQHT-SGFGIEFNAKDALKVVKSNQAS-LKVACAEEWQESRSDSEHNKEVVKPYDWTYTTDYKGTL--------------LGDNMKLNVIPTTDKINTEKLKAREQIMFFEEVLLFEDELHDHGVSSL 168          
BLAST of FC923942 vs. ExPASy Swiss-Prot
Match: TIPRL_RAT (TIP41-like protein OS=Rattus norvegicus GN=Tiprl PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 57/168 (33.93%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  220 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQ-EGLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADXGVSLL 711
            W++ + K  I+ S+ VE+   +L    LPEM+FG++ L ++H  SG  I FNA DAL      +G+  ++V  A +W   +   +  +++I  YD+T+TT Y G+               L  S  L      + ID   L ++E I F++EV+L+EDEL D GVS L
Sbjct:   18 WKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQH-GSGFGIEFNATDALRCVNNYQGM--LKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGTL--------------LGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGVSSL 168          
BLAST of FC923942 vs. ExPASy Swiss-Prot
Match: TIPRL_MOUSE (TIP41-like protein OS=Mus musculus GN=Tiprl PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 57/168 (33.93%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  220 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQ-EGLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADXGVSLL 711
            W++ + K  I+ S+ VE+   +L    LPEM+FG++ L ++H  SG  I FNA DAL      +G+  ++V  A +W   +   +  +++I  YD+T+TT Y G+               L  S  L      + ID   L ++E I F++EV+L+EDEL D GVS L
Sbjct:   18 WKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQH-GSGFGIEFNATDALRCVNNYQGM--LKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGTL--------------LGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGVSSL 168          
BLAST of FC923942 vs. ExPASy Swiss-Prot
Match: TIPRL_HUMAN (TIP41-like protein OS=Homo sapiens GN=TIPRL PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 57/168 (33.93%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  220 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQ-EGLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADXGVSLL 711
            W++ + K  I+ S+ VE+   +L    LPEM+FG++ L ++H  SG  I FNA DAL      +G+  ++V  A +W   +   +  +++I  YD+T+TT Y G+               L  S  L      + ID   L ++E I F++EV+L+EDEL D GVS L
Sbjct:   18 WKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQH-GSGFGIEFNATDALRCVNNYQGM--LKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGTL--------------LGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGVSSL 168          
The following BLAST results are available for this feature:
BLAST of FC923942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TIPRL_DICDI2.223e-2236.99TIP41-like protein OS=Dictyostelium discoideum GN=... [more]
TIPRL_XENLA1.396e-1634.73TIP41-like protein OS=Xenopus laevis GN=tiprl PE=2... [more]
TIP41_YEAST9.046e-1631.91Type 2A phosphatase activator TIP41 OS=Saccharomyc... [more]
TIPRL_XENTR5.863e-1532.34TIP41-like protein OS=Xenopus tropicalis GN=tiprl ... [more]
TIPRL_RAT1.706e-1433.93TIP41-like protein OS=Rattus norvegicus GN=Tiprl P... [more]
TIPRL_MOUSE1.706e-1433.93TIP41-like protein OS=Mus musculus GN=Tiprl PE=2 S... [more]
TIPRL_HUMAN1.706e-1433.93TIP41-like protein OS=Homo sapiens GN=TIPRL PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionC31710G07EF StrClemenN Citrus clementina cDNA clone C31710G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923942 ID=FC923942; Name=FC923942; organism=Citrus clementina; type=EST; length=718bp
GGAGAAGCAAATCTCTGCATCCTAAAAACCCAAAGACGCAACCAAACAGA
AAATAGCGGGGCAAACTAAGAAGTCGTACTTAAATAGGAAGGTAAAACCG
GAAGCCGATCGAGTTGGTGAGACAAGCCGGGGATGGAAGTCGAGGTGGAC
GAGAAAGACCTAAAGGTAGCCGGTGCCGAACCGTTGACTGGCGAACGCCG
CGGACTGCGGATTCGCGGCTGGGAGATCGAGTCTCGTAAGCGCTCCATTC
TCAATTCCTCCTCTGTCGAGCGGTGGGAGCAAAAGCTAGAAACAAATCAT
TTGCCAGAGATGGTTTTTGGAGAGAGTTGTTTGGTTCTTAAGCATGTTGA
AAGTGGAACTAAGATTCATTTCAATGCGTTTGATGCTTTAAGTGGTTGGA
AACAGGAAGGTTTACCGCCTGTTGAGGTTCCTGCGGCCGCACAATGGAAA
TTCAGAAGCAAGCCATTTGAGCAGTTGATACTAGATTACGACTACACATT
TACAACACCTTACTGTGGAAGTGAAACAATTGAGATGGATACGGATAAGC
ATGGGACTAGAGACAACTTGGATGGGAGTTCCAGCCTGCACTGGGAGGAC
TGTAAGGAGAAAATTGATGTGGTAGCGCTAGCATCAAAAGAGCCTATTCT
TTTCTATGATGAGGTAGTTTTATATGAAGATGAGTTGGCTGATNATGGAG
TGTCTCTTTTACTGTGAA
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