FC923946

Overview
NameFC923946
Unique NameFC923946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923946_ssr2 microsatellite FC923946_ssr2:2..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15458 contig Ccv1_Contig15458:308..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.339e-63
Identity = 122/164 (74.39%), Postives = 135/164 (82.32%), Query Frame = 1
Query:  211 MDSLCCFNAS-YSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            M  LCCF +S Y  +V            N G +KFG+SLVKGKANHPMEDYHV+KFV++ G+ELGLFAIYDGHLGE VPAYLQKHLFSNILKEE+F  DPQRSI  AYEKTD+AILSHSSDLGRGGSTAVTAIL+NG+RLWVANVGDSRAVLS  G A+QMTID
Sbjct:    1 MAKLCCFGSSDYDLVVGRASTSSGKGRNNDGEIKFGYSLVKGKANHPMEDYHVSKFVKIDGNELGLFAIYDGHLGERVPAYLQKHLFSNILKEEQFRYDPQRSIIAAYEKTDQAILSHSSDLGRGGSTAVTAILMNGRRLWVANVGDSRAVLSQGGQAIQMTID 164          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.016e-60
Identity = 111/163 (68.10%), Postives = 131/163 (80.37%), Query Frame = 1
Query:  211 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            M   CCF ++   +             + G++K+GFSLVKGKANHPMEDYHVA F+ +Q HELGLFAIYDGH+G++VPAYLQK LFSNILKE EFWVDP+RSI+KAYEKTD+AILS+SSDLGRGGSTAVTAILING++LW+ANVGDSRAVLS  G   QM+ D
Sbjct:    1 MGKFCCFTSASEVVGGQSSSRSGKGRSDEGMIKYGFSLVKGKANHPMEDYHVANFINIQDHELGLFAIYDGHMGDSVPAYLQKRLFSNILKEGEFWVDPRRSIAKAYEKTDQAILSNSSDLGRGGSTAVTAILINGRKLWIANVGDSRAVLSHGGAITQMSTD 163          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.109e-50
Identity = 101/165 (61.21%), Postives = 121/165 (73.33%), Query Frame = 1
Query:  211 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVK--FGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            M   CCF A  S+                G VK  +GF LV+G  NHPMEDYHVA+  + +G+ELGLFAI+DGHLG+TVPAYLQK+LF+NIL EEEF   P R+I KAYEKTD+AILSH+ DLG+GGSTAVTAIL+NG++LWVANVGDSRAVL   G  +QM+ D
Sbjct:    1 MSRFCCFGAGCSEFSGHASTSSGKGKGIQGQVKVSYGFYLVRGMTNHPMEDYHVAELAEEKGNELGLFAIFDGHLGDTVPAYLQKNLFANILNEEEFLTQPDRAIIKAYEKTDQAILSHTPDLGQGGSTAVTAILLNGRKLWVANVGDSRAVLLKGGRPIQMSTD 165          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.312e-48
Identity = 97/164 (59.15%), Postives = 124/164 (75.61%), Query Frame = 1
Query:  211 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILS-HSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            M  +CC + S +++V              G +K+GFSL+KGK+NH MEDYHVAKF    G+ELGLFAI+DGH G+ V AYLQKHLFSNILK+ EF VDP+R+I+KAYE TD+ IL+ + +DL  GGSTAVTAILING+ LW+ANVGDSRA++S+ G A QM++D
Sbjct:    1 MPKICC-SRSATQVVVAQKSNSGKGRNGEGGIKYGFSLIKGKSNHSMEDYHVAKFTNFNGNELGLFAIFDGHKGDHVAAYLQKHLFSNILKDGEFLVDPRRAIAKAYENTDQKILADNRTDLESGGSTAVTAILINGKALWIANVGDSRAIVSSRGKAKQMSVD 163          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.668e-41
Identity = 81/132 (61.36%), Postives = 102/132 (77.27%), Query Frame = 1
Query:  304 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            +  GF  VKGK++HPMEDY V++F +L+GHELGLFAI+DGHLG  V  YLQ +LF NILKE++FW D + +I  AY  TD  IL  S  LG+GGSTAVT ILI+G++L VANVGDSRAV+S  GVA Q+++D
Sbjct:   34 ITHGFHCVKGKSSHPMEDYVVSEFKKLEGHELGLFAIFDGHLGHDVAKYLQTNLFDNILKEKDFWTDTENAIRNAYRSTDAVILQQSLKLGKGGSTAVTGILIDGKKLVVANVGDSRAVMSKNGVAHQLSVD 165          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.952e-40
Identity = 77/132 (58.33%), Postives = 102/132 (77.27%), Query Frame = 1
Query:  304 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            V  GF LV+GK+ H MEDYHVA++   + HELGLFAI+DGHLG++VP+YL+ +LF NILKE  FW +PQ +I  AY  T++ IL ++  LG GGSTAVTAI+++G+ +WVANVGDSRAV+   G A Q+T+D
Sbjct:   69 VTHGFHLVEGKSGHDMEDYHVAEYKYDKSHELGLFAIFDGHLGDSVPSYLKANLFCNILKEPIFWTNPQEAIKNAYRSTNKYILENAKQLGPGGSTAVTAIVVDGKDMWVANVGDSRAVVCERGAANQLTVD 200          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.150e-39
Identity = 84/135 (62.22%), Postives = 104/135 (77.04%), Query Frame = 1
Query:  304 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILSHSSDLGRGGSTAVTAILI---NGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            VK G+ LVKGK+NHPMEDY VA++ Q   H+LGLFAI+DGHLG TVP +L+ HLF NILK+ EF  +PQ +I  AY+ TD  IL  +++LGRGGSTAVTAILI   N   L VANVGDSRAV+S +GVA Q+++D
Sbjct:   37 VKHGYHLVKGKSNHPMEDYLVAEYRQEGEHDLGLFAIFDGHLGHTVPDFLRSHLFDNILKQPEFLSNPQAAIRNAYQLTDAKILESAAELGRGGSTAVTAILISSENSVNLVVANVGDSRAVISKSGVAKQLSVD 171          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.961e-39
Identity = 78/132 (59.09%), Postives = 99/132 (75.00%), Query Frame = 1
Query:  304 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            +  G+  VKGKA HPMEDY V++F ++ GH+LGLFAI+DGHLG  V  YLQ +LF NILKE++FW D + +I  AY  TD  IL  S  LG+GGSTAVT ILI+G+ L +ANVGDSRAV+S  GVA Q+++D
Sbjct:   30 IAHGYDFVKGKAGHPMEDYVVSEFKKVDGHDLGLFAIFDGHLGHDVAKYLQTNLFDNILKEKDFWTDTKNAIRNAYISTDAVILEQSLKLGKGGSTAVTGILIDGKTLVIANVGDSRAVMSKNGVASQLSVD 161          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.562e-39
Identity = 81/132 (61.36%), Postives = 98/132 (74.24%), Query Frame = 1
Query:  304 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTID 699
            +  GF LVKGKA H MEDY VAKF ++  +ELGLFAI+DGHL   +P YL  HLF NILKE  FW +P+++I KAY  TD  IL  + DLG+GGSTAVTAILIN Q+L VANVGDSRAV+   GVA  +++D
Sbjct:   40 ITHGFHLVKGKAFHEMEDYVVAKFKEVDDNELGLFAIFDGHLSHEIPDYLCSHLFENILKEPNFWQEPEKAIKKAYYITDTTILDKADDLGKGGSTAVTAILINCQKLVVANVGDSRAVICQNGVAKPLSVD 171          
BLAST of FC923946 vs. ExPASy Swiss-Prot
Match: P2C28_ARATH (Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26
Identity = 62/118 (52.54%), Postives = 85/118 (72.03%), Query Frame = 1
Query:  349 MEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDRAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVL-STAGVAVQMTID 699
            MED+ VA    ++GH LGL+AI+DGH G  V  YLQ HLF NIL + +FW +P+++I +AY+ TD  IL +     RGGSTAVTAI+I+G+++ VANVGDSRA+L   + V  Q+T+D
Sbjct:    1 MEDFIVADTKTVKGHNLGLYAIFDGHSGSDVADYLQNHLFDNILSQPDFWRNPKKAIKRAYKSTDDYILQNVVG-PRGGSTAVTAIVIDGKKIVVANVGDSRAILCRESDVVKQITVD 117          
The following BLAST results are available for this feature:
BLAST of FC923946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
P2C10_ARATH4.339e-6374.39Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
P2C09_ARATH2.016e-6068.10Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C41_ORYSJ1.109e-5061.21Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
P2C17_ARATH2.312e-4859.15Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C58_ARATH4.668e-4161.36Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
P2C44_ORYSJ3.952e-4058.33Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C62_ORYSJ1.150e-3962.22Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C20_ARATH1.961e-3959.09Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
P2C39_ARATH2.562e-3961.36Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C28_ARATH2.487e-2652.54Probable protein phosphatase 2C 28 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC31710G11EF StrClemenN Citrus clementina cDNA clone C31710G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923946 ID=FC923946; Name=FC923946; organism=Citrus clementina; type=EST; length=706bp
GGAAGAAGAAGAACATCAAAAACCCCCCACGGAACAAAGATCACCAACAA
GGAGCATCAGTTGATTTTTAGCTTTGAATTGATCAACGAGAGATTGAGAA
TTCTGGGAGCTGGGCTTGATTTAAAATTTTGGAGTAGAGTTGTTTACCAA
GAGTTTGATGTTGAAATTTTAGTTGAATTAGTTGGAACTGCTTTGCTGAA
TTTTTATTTTATGGATAGCTTATGCTGCTTTAATGCTTCGTACTCGAAGC
TTGTGGGAGGACGCTCGTCATCTACTGGTAAGGGGAGAAGCAATGTTGGA
TTAGTCAAGTTTGGTTTCAGCTTGGTAAAAGGGAAAGCTAATCATCCCAT
GGAGGATTATCATGTTGCAAAATTTGTACAACTTCAAGGTCATGAATTAG
GGTTGTTTGCTATTTATGACGGCCATTTGGGAGAAACTGTGCCTGCCTAC
CTACAAAAGCATTTGTTTTCCAACATCCTAAAGGAGGAAGAGTTTTGGGT
TGACCCCCAGAGATCTATCTCTAAAGCTTATGAGAAGACAGACCGAGCAA
TTCTCTCACACAGCTCTGACTTGGGCCGGGGTGGATCCACTGCTGTTACT
GCAATTTTGATAAATGGTCAAAGGTTATGGGTAGCCAACGTTGGAGATTC
TCGAGCAGTTCTTTCAACGGCTGGCGTTGCAGTACAGATGACTATAGACA
TGAGCC
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