FC924884

Overview
NameFC924884
Unique NameFC924884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC924884_ssr159 microsatellite FC924884_ssr159:159..180. BLAST: Citrus ESTs to Prunus persica proteins V1
FC924884_ssr272 microsatellite FC924884_ssr272:272..283. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14574 contig Ccv1_Contig14574:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924884 vs. ExPASy Swiss-Prot
Match: ALIS5_ARATH (ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.982e-18
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  431 YSKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSPLASRDVVEIVDRY-RD*LHTSS 613
            YS+FTQQELPACKPILTP+WVILTFLV G+ F+P+G+    AS+ VVEIVDRY  D + TSS
Sbjct:   30 YSRFTQQELPACKPILTPRWVILTFLVAGVVFIPLGVICLFASQGVVEIVDRYDTDCIPTSS 91          

HSP 2 Score: 23.483 bits (49), Expect = 2.982e-18
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  591 ETDCIPVANRTDKGAFFQ 644
            +TDCIP ++R +  A+ Q
Sbjct:   83 DTDCIPTSSRNNMVAYIQ 100          
BLAST of FC924884 vs. ExPASy Swiss-Prot
Match: ALIS3_ARATH (ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.127e-17
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 2
Query:  431 YSKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSPLASRDVVEIVDRY 589
            YSKFTQQELPACKPILTP WVI TFL+V + F+P+G+ S  AS+DVVEIVDRY
Sbjct:   30 YSKFTQQELPACKPILTPGWVISTFLIVSVIFIPLGVISLFASQDVVEIVDRY 82          
BLAST of FC924884 vs. ExPASy Swiss-Prot
Match: ALIS1_ARATH (ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.084e-17
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 2
Query:  431 YSKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSPLASRDVVEIVDRY 589
            YSKFTQQELPACKPILTP WVI TFL++ + F+P+G+ S  AS+DVVEIVDRY
Sbjct:   31 YSKFTQQELPACKPILTPGWVISTFLIISVIFIPLGVISLFASQDVVEIVDRY 83          
BLAST of FC924884 vs. ExPASy Swiss-Prot
Match: ALIS4_ARATH (Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.746e-14
Identity = 38/69 (55.07%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  434 SKFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSPLASRD-----------------VVEIVDRY 589
            S+FTQQELPACKPILTPKWVILTFLV G+ F+P+G+    AS+                  V+EIVDRY
Sbjct:   17 SRFTQQELPACKPILTPKWVILTFLVSGVVFIPLGVICLFASQGVCFKSFLTFLSYNYIYFVIEIVDRY 85          

HSP 2 Score: 23.8682 bits (50), Expect = 3.746e-14
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  591 ETDCIPVANRTDKGAFFQ 644
            +TDCIP+++R +K  + Q
Sbjct:   86 DTDCIPLSSRDNKVRYIQ 103          
BLAST of FC924884 vs. ExPASy Swiss-Prot
Match: ALIS2_ARATH (Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 2
Query:  437 KFTQQELPACKPILTPKWVILTFLVVGIAFVPIGITSPLASRDVVEIVDRY 589
            +F QQ+LPACKP+LTP  VI  F+++G  F+PIG+ +  ASRD +EI+DRY
Sbjct:   28 QFKQQKLPACKPVLTPISVITVFMLMGFVFIPIGLITLRASRDAIEIIDRY 78          
The following BLAST results are available for this feature:
BLAST of FC924884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ALIS5_ARATH2.982e-1869.35ALA-interacting subunit 5 OS=Arabidopsis thaliana ... [more]
ALIS3_ARATH3.127e-1775.47ALA-interacting subunit 3 OS=Arabidopsis thaliana ... [more]
ALIS1_ARATH4.084e-1773.58ALA-interacting subunit 1 OS=Arabidopsis thaliana ... [more]
ALIS4_ARATH3.746e-1455.07Putative ALA-interacting subunit 4 OS=Arabidopsis ... [more]
ALIS2_ARATH5.713e-1156.86Putative ALA-interacting subunit 2 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YM14FM1 TF Citrus clementina cDNA clone KN0AAP6YM14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924884 ID=FC924884; Name=FC924884; organism=Citrus clementina; type=EST; length=658bp
TTTTTTTTTTTTTTTTCTAGACTCGTAGTTGTAGAGCTAGCTCAGGCTCA
GGCTTGGAGTGGAGATGCAGAAACTTCTGCTTTCTATCGTCTTCGTTTTC
AAAGTCAAAACAAGAGCAAACCAAATCAAACCGGAGCATCATATTTAAAT
TGAAATTTTATATATATATATATATATATAAAACTCATAAGCCAACTTTC
TTGTATTTGTTGCCCCATCTCACTCCCACAACTCTTTCTTTGATTTTCCC
CCAAAAAAATAAAAATAAAAAAAAGAAAGAAAGAAACGGAAACTTTGTTT
TTGTAGTCAGTGTAATCTAATTCCGATCTCTATGATGAATTCCAATGCGG
CGTCGTCCAGCACGGCCAATCCCGACGCTGCTGGATCCCCTGATCCTCCG
GCTCCCAGGCGAAGCTCTAAGCGACCCAAGTATTCCAAGTTTACTCAACA
GGAGCTTCCGGCTTGCAAGCCGATTCTTACGCCGAAATGGGTGATTCTAA
CATTTTTGGTCGTTGGCATTGCGTTCGTCCCGATTGGAATTACTTCCCCC
CTTGCTTCCCGAGATGTTGTTGAAATTGTTGATCGGTACCGAGACTGATT
GCATACCAGTAGCTAATAGGACTGACAAGGGGGCATTTTTTCAGAGTAAT
GCAAGTAA
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