FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1794 contig Ccv1_Contig1794:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.599e-48
Identity = 103/196 (52.55%), Postives = 139/196 (70.92%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG+CKKV V+ ++ +I  G+G++  IE+RCEQ+  AIE+STSDY+ + L+ERL  LS  VA+LK+GGA+ AE                  +EEGI+PGGGVALL+A+ ELEKLP  N  +KIGV+++Q+A+K P+YTIAS AG + +V V KLL Q+NPDL YD  + EYVD VK+ I+D PLK+I+  L DA S
Sbjct:  346 MLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIID-PLKVIRTALVDAAS 540          

HSP 2 Score: 21.557 bits (44), Expect = 1.599e-48
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + EN KA ++D+A LTG
Sbjct:  311 FGENRKANLQDLAALTG 327          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.332e-47
Identity = 99/196 (50.51%), Postives = 138/196 (70.41%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLGSCKK+ ++ ++ +I  G+G++  IE+RCEQ+  AIE+STSDY+ + L+ERL  LS  VA+LK+GGA+ AE                  +EEGI+PGGGVALL+AS+EL+KL   N  +KIGV+++Q+A+K P++TIAS AG +   VV KLL Q+NPDL YD  + EYVD +K+ I+D PLK+I+  L DA S
Sbjct:  347 MLGSCKKITISKDDTVILDGAGDKKSIEERCEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIID-PLKVIRTALVDAAS 541          

HSP 2 Score: 22.3274 bits (46), Expect = 1.332e-47
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + EN KA + D+A+LTG
Sbjct:  312 FGENRKAGLHDLAVLTG 328          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.194e-47
Identity = 106/227 (46.70%), Postives = 148/227 (65.20%), Query Frame = 3
Query:   78 KKIAKQSCGTLPFSQVVTA--ASNSLYIPL-MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            +K   Q    L   QV+T     N   + L MLGSCKK+ ++ ++ +I  G+G++  IE+RC+Q+   IE STSDY+ + L+ERL  LS  VA+LK+GGA+ AE                  +EEGI+PGGGVALL+AS+EL+KLP  N  +KIGV+++Q+A+K P++TIAS AG +   VV KLL Q++PDL YD  + EYVD VK+ I+D PLK+I+  L DA S
Sbjct:  316 RKAGLQDLAVLTGGQVITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKAIEERCDQIRSGIEASTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDDPDLGYDAAKGEYVDMVKAGIID-PLKVIRTALVDAAS 541          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 2.454e-46
Identity = 101/198 (51.01%), Postives = 136/198 (68.69%), Query Frame = 3
Query:  156 PLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            P MLG+CKKV V+ ++ +I  G+G++  IE+R EQ+  AIE STSDY+ + L+ERL  LS  VA+LK+GGA+ AE                  +EEGI+PGGGVALL+AS+EL+KL   N  +KIGV+++Q+A+K P++TIAS AG +   VV KLL QEN DL YD  + EYVD VK+ I+D PLK+I+  L DA S
Sbjct:  347 PHMLGTCKKVTVSKDDTVILDGAGDKKSIEERAEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQENTDLGYDAAKGEYVDMVKTGIID-PLKVIRTALVDAAS 543          

HSP 2 Score: 23.483 bits (49), Expect = 2.454e-46
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + EN KA ++D+AILTG
Sbjct:  314 FGENRKANLQDLAILTG 330          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.198e-46
Identity = 100/198 (50.51%), Postives = 136/198 (68.69%), Query Frame = 3
Query:  156 PLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            P MLGSCKKV V+ ++ +I  G+G++  IE+R +Q+  A+E STSDY+ + L+ERL  LS  VA+LK+GGA+ AE                  +EEGI+PGGGVALL+AS+EL+KL   N  +KIGV+++Q+A+K P++TIAS AG +   VV KLL Q N DL YD  +DEYVD VK+ I+D PLK+I+  L DA S
Sbjct:  347 PHMLGSCKKVTVSKDDTVILDGAGDKKSIEERADQIRSAVENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQGNTDLGYDAAKDEYVDMVKAGIID-PLKVIRTALVDAAS 543          

HSP 2 Score: 23.483 bits (49), Expect = 3.198e-46
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + EN KA ++D+AILTG
Sbjct:  314 FGENRKANLQDLAILTG 330          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.467e-45
Identity = 96/196 (48.98%), Postives = 133/196 (67.86%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQ-VSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            M G+CKKV V+ ++ ++  G+G++  I +RCEQ+   +E STSDY+ + L+ERL  LS  VA+LK+GGA+  E                  +EEGI+PGGGVALL+AS+ELEKL   N  +KIGV+++Q+A+K P+YTIAS AG +   VV KLL Q+NPDL YD  + EYVD +K+ I+D PLK+I+  L DA S
Sbjct:  347 MFGNCKKVTVSKDDTVVLDGAGDKQAIGERCEQIRSMVEASTSDYDKEKLQERLAKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELEKLSTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIID-PLKVIRTALVDAAS 541          

HSP 2 Score: 21.1718 bits (43), Expect = 3.467e-45
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + EN KA + D+A LTG
Sbjct:  312 FGENRKANLHDLAALTG 328          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.467e-43
Identity = 104/228 (45.61%), Postives = 145/228 (63.60%), Query Frame = 3
Query:   78 KKIAKQSCGTLPFSQVVTA--ASNSLYIPL-MLGSCKKVKVTNNEMIIHG-GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            +K       TL  +QV+T     N   I L MLG+CKK+ V+ ++ +  G G+G++  I +RCEQ+   +E S SDY+ + L+ERL  LS  VA+LK+GGA+ +E                  +EEGI+PGGGVALL+AS+EL+KL   N   KIGV+++Q+A+K P+YTIAS AG + +V V KLL  +NPDL YD  + EYVD VKS I+D P+K+I+  L DA S
Sbjct:  318 RKANMHDLATLTGAQVITEELGMNLEKIDLSMLGNCKKITVSKDDTVFLGWGAGDKKAIGERCEQIRSMVEASESDYDKEKLQERLAKLSGGVAVLKIGGASESEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLSTANFDHKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLESDNPDLGYDAAKGEYVDMVKSGIID-PVKVIRTALVDAAS 544          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60C_ARATH (Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.190e-36
Identity = 86/198 (43.43%), Postives = 127/198 (64.14%), Query Frame = 3
Query:  156 PLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            P +LG+ KKV VT ++ II  G G++  IE+RCE+L  A E STS ++ +  +ERL  LS  VA+ KVGGA+ +E                  +EEGIIPGGGVALL+A++ L+ L   N  ++ GV+++Q+A+K P +TIA+ AG+  S VV KLL Q++ +  +D  + +YVD VK+ I+D P+K+I+  L DA S
Sbjct:  344 PELLGTAKKVTVTRDDTIILHGGGDKKLIEERCEELRSANEKSTSTFDQEKTQERLSKLSGGVAVFKVGGASESEVGERKDRVTDALNATRAAVEEGIIPGGGVALLYATKALDNLQTENEDQRRGVQIVQNALKAPAFTIAANAGYDGSLVVGKLLEQDDCNFGFDAAKGKYVDMVKAGIID-PVKVIRTALTDAAS 540          

HSP 2 Score: 21.1718 bits (43), Expect = 3.190e-36
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + +N KA + D+A+LTG
Sbjct:  311 FGDNRKASLDDLAVLTG 327          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.741e-30
Identity = 77/196 (39.29%), Postives = 112/196 (57.14%), Query Frame = 3
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG   KV V  +   I GG GN   I+ R EQ+   IE +TS+Y+ + L+ERL  L+  VAI+KVG AT AE                  +EEGI+PGGG+A+  AS  L  +   N  +  G+K++++A K+PL  IA  AGF+ SV +EK+   +N +  +D    EYVD V++ I+D P K+++  L +A S
Sbjct:  316 MLGKADKVVVDKDNTTIIGGKGNPEDIKARIEQIKKQIETTTSEYDKEKLQERLAKLAGGVAIIKVGAATEAELKEKKDRVDDAVHATKAAVEEGIVPGGGIAIFRASRALCNIKEENTDKAWGIKIVKNACKVPLKQIAYNAGFEGSVIIEKIKDVDNVNYGFDAATGEYVDMVEAGIID-PTKVVRTALQNAAS 510          

HSP 2 Score: 23.483 bits (49), Expect = 1.741e-30
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 2
Query:   74 YEENCKAIMRDIAILTG 124
            + E  KA+++DIAILTG
Sbjct:  281 FGERRKAMLQDIAILTG 297          
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PELUB (60 kDa chaperonin OS=Pelagibacter ubique GN=groL PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.128e-30
Identity = 78/195 (40.00%), Postives = 108/195 (55.38%), Query Frame = 3
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGSCK+VKV  +   I  G+G +  IE RC Q+   +  +TSDY+ + L+ERL  L+  VA++KVGGAT  E                   EEGI+ GGG ALL+AS+ L+ L      +K GV L+  A++ P+  I   AG   S VV KLL Q   ++ YD   +EYVD     I+D P+K+++  L DA S
Sbjct:  316 LGSCKRVKVDKDNSTIISGNGKKSEIEARCAQIKQQVGETTSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVEDALNATRAAAEEGIVVGGGCALLYASQSLDTLKVKGDDQKAGVALVAKALQAPIRQITLNAGVDGSVVVGKLLEQNKKNMGYDAQNEEYVDMFAKGIID-PVKVVRTALQDAAS 509          
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60A_ARATH1.599e-4852.55Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH62_CUCMA1.332e-4750.51Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH61_CUCMA8.194e-4746.70Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH61_MAIZE2.454e-4651.01Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH62_MAIZE3.198e-4650.51Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH60B_ARATH3.467e-4548.98Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH60_BRANA2.467e-4345.61Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH60C_ARATH3.190e-3643.43Chaperonin CPN60-like 2, mitochondrial OS=Arabidop... [more]
CH60_SULSY1.741e-3039.2960 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]
CH60_PELUB3.128e-3040.0060 kDa chaperonin OS=Pelagibacter ubique GN=groL P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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