FC924903

Overview
NameFC924903
Unique NameFC924903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14166 contig Ccv1_Contig14166:960..1549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.250e-74
Identity = 136/146 (93.15%), Postives = 141/146 (96.58%), Query Frame = 3 
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRGYVASNSKDDPAKGA+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EILTKIDRRSGKE+EKEPKFLKNGDAG VKM PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGA 437
[Close]
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 6.548e-74
Identity = 135/146 (92.47%), Postives = 142/146 (97.26%), Query Frame = 3 
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRG+VASNSKDDPAKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIK+VDKKDP+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTGA 437
[Close]
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 8.551e-74
Identity = 134/146 (91.78%), Postives = 142/146 (97.26%), Query Frame = 3 
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRGYVASNSKDDPAKGA++FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAVGV+K+VDKKDP+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTGA 437
[Close]
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.459e-73
Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 3 
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRG VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSV+KKDPSGA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGA 437
[Close]
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 3.250e-73
Identity = 133/146 (91.10%), Postives = 142/146 (97.26%), Query Frame = 3 
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIK+V+KKDP+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGA 437
[Close]
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.235e-72
Identity = 132/146 (90.41%), Postives = 141/146 (96.58%), Query Frame = 3 
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRG+VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437
[Close]
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 1.235e-72
Identity = 133/146 (91.10%), Postives = 141/146 (96.58%), Query Frame = 3 
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRGYVASNSKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIK+V+KKDP+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGA 437
[Close]
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.235e-72
Identity = 134/146 (91.78%), Postives = 139/146 (95.21%), Query Frame = 3 
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437
[Close]
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.235e-72
Identity = 133/146 (91.10%), Postives = 141/146 (96.58%), Query Frame = 3 
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNVSVKDLKRGYVASNSKDDPAKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE+LTKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETF+EYPPLGRFAVR MRQTVAVGVIK+V+KKDP+GA
Sbjct:  292 PGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDPTGA 437
[Close]
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 8.004e-72
Identity = 131/146 (89.73%), Postives = 140/146 (95.89%), Query Frame = 3 
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRGYVAS SKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437
The following BLAST results are available for this feature:
BLAST of FC924903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_ARATH2.250e-7493.15Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TOBAC6.548e-7492.47Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC8.551e-7491.78Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_MANES1.459e-7393.84Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_SOYBN3.250e-7391.10Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_VICFA1.235e-7290.41Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_ORYSJ1.235e-7291.10Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A2_DAUCA1.235e-7291.78Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A1_DAUCA1.235e-7291.10Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_MAIZE8.004e-7289.73Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM24FM1 TF Citrus clementina cDNA clone KN0AAP6YM24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924903 ID=FC924903; Name=FC924903; organism=Citrus clementina; type=EST; length=590bp
TTCCTGGTGCTTATGAGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGAT
CTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAAGGG
GGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCCAGA
TTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATAGCT
GTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGA
GCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTGTTA
AGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATATCCC
CCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCGCTGTTGG
AGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAGCCAAGGTAACCA
AGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCTTTGTCTGCAAGT
AATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCTTTTTAGGCATAA
ATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATAAT
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