FC924906

Overview
NameFC924906
Unique NameFC924906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1796 contig Ccv1_Contig1796:1..481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 6.300e-51
Identity = 93/106 (87.74%), Postives = 101/106 (95.28%), Query Frame = 1
Query:  163 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            MASH+VGYPRMGPKRELKFALESFWDGKS+A++L+ V+ADLR+SIW QMADAGIK+IPSNTFSYYDQVLDTTAMLGAVPPRY W GGEI FDVYFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLKKVSADLRSSIWKQMADAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYGWTGGEIEFDVYFSMARGNASVPA 106          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 2.647e-49
Identity = 92/106 (86.79%), Postives = 99/106 (93.40%), Query Frame = 1
Query:  163 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            MASH+VGYPRMGPKRELKFALESFWD KSSA++LQ VAADLR+SIW QMADAGIK+IPSNTFSYYDQVLDT  MLGAVPPRY++ GGEIGFD YFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVAADLRSSIWKQMADAGIKYIPSNTFSYYDQVLDTATMLGAVPPRYNFAGGEIGFDTYFSMARGNASVPA 106          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 3.822e-48
Identity = 89/106 (83.96%), Postives = 99/106 (93.40%), Query Frame = 1
Query:  163 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            MASH+VGYPRMGPKRELKFALESFWDGKS+A++LQ V+ADLR+SIW QM+ AG KFIPSNTF++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPA 106          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 5.712e-44
Identity = 85/106 (80.19%), Postives = 93/106 (87.74%), Query Frame = 1
Query:  163 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            MASH+VGYPRMGPKRELKFALESFWDGKSSA++L+     L   +  QM+DAGIK+IPSNTFSYYDQVLDTTAMLGAVPPRY+W GGEIGF  YFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLEKCQLILGIHL-KQMSDAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWTGGEIGFSTYFSMARGNASVPA 105          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_CAUCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Caulobacter crescentus GN=metE PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.510e-28
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  178 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPA 480
            +G+PR+GPKRELKFALE++W GK+ AD L + A DLRA  W + A  G+  +PSN FS YD VLDT  M+GA+P  Y W+GG +    YF+MARG+   PA
Sbjct:    8 LGFPRIGPKRELKFALEAYWAGKTDADALLDTARDLRAKTWTRQAALGVAHVPSNDFSLYDHVLDTAVMVGAIPAAYGWSGGTVDLATYFAMARGDQGRPA 108          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_RHILO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhizobium loti GN=metE PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.788e-28
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  178 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGN 465
            +G PR+G +RELKFALES+W GKS A +L   A  LRA+ W +  D G+  IPSN FS YD VLDT AM+GAVP RY+W  GE+  D YF+MARGN
Sbjct:    4 LGVPRIGRRRELKFALESYWSGKSPAADLLATAKALRAASWREQHDRGVSKIPSNDFSLYDHVLDTVAMVGAVPARYTWTDGEVPLDTYFAMARGN 99          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_RHOPT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.112e-26
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  160 AMASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARG 462
            ++A   +G PR+GP+RELK ALESFW GKS+  +L  VAA LRA+ W + +  G+  IPSN FS YDQVLDT+ M+GA+P  Y W GG +    YF+MARG
Sbjct:    9 SLAVATLGTPRIGPRRELKSALESFWAGKSTEADLLKVAAALRAANWARQSARGVSVIPSNDFSLYDQVLDTSVMVGAIPEIYGWRGGPVSLATYFAMARG 109          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_RHOPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris GN=metE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.112e-26
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  160 AMASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARG 462
            ++A   +G PR+GP+RELK ALESFW GKS+  +L  VAA LRA+ W + +  G+  IPSN FS YDQVLDT+ M+GA+P  Y W GG +    YF+MARG
Sbjct:    9 SLAVATLGTPRIGPRRELKSALESFWAGKSTEADLLKVAAALRAANWARQSARGVSVIPSNDFSLYDQVLDTSVMVGAIPEIYGWRGGPVSLATYFAMARG 109          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_STRCO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces coelicolor GN=metE PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.161e-26
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 1
Query:  160 AMASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASV 474
            A  + V GYPR GP RELK A+E +W G+ SA EL+++AADLRA+ W ++ADAGI  +P+  FSYYD VLDTT M+GA+P R+         D YF+MARG   V
Sbjct:    9 AARATVYGYPRQGPNRELKKAIEGYWKGRVSAPELRSLAADLRAANWRRLADAGIDEVPAGDFSYYDHVLDTTVMVGAIPERHRAAVAADALDGYFAMARGTQEV 113          
BLAST of FC924906 vs. ExPASy Swiss-Prot
Match: METE_SALRD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=metE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.323e-24
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  178 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARG 462
            +GYPR+G  RELK A+E +W G  + DEL++ A  LR S W    + G+  +PSN FSYYDQVLD  AM+GAVP R+ W+G E+  D YF+MARG
Sbjct:    7 LGYPRIGAHRELKRAVEGYWKGDLTKDELRDSAQALRESHWATQQELGLDVVPSNDFSYYDQVLDACAMVGAVPERFPWDGTEVDLDTYFAMARG 101          
The following BLAST results are available for this feature:
BLAST of FC924906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
METE_MESCR6.300e-5187.745-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO2.647e-4986.795-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ARATH3.822e-4883.965-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC5.712e-4480.195-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAUCR1.510e-2854.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHILO9.788e-2859.385-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOPT4.112e-2654.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOPA4.112e-2654.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRCO9.161e-2653.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALRD1.323e-2453.685-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL18FM1 TF Citrus clementina cDNA clone KN0AAP1YL18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924906 ID=FC924906; Name=FC924906; organism=Citrus clementina; type=EST; length=481bp
TATCCATATCTTTTTCAAAAACGTCTCCGCTTTTCTCATTCCTTCGCTGC
TCCTTCCGTCGCACTCGTTTCAGGTTCTTCAGATTGTCGCAAATTTCTTT
CTGGGTCTTTTTTTTTTAAGGTTGTGAATTTTGGGTTAATTGTTTTGGGG
TGTTGCAGAGCAATGGCGTCGCATGTAGTGGGGTACCCTCGAATGGGACC
GAAGAGAGAGTTGAAGTTCGCGCTGGAGTCATTCTGGGACGGGAAGAGCA
GCGCCGATGAGTTGCAGAACGTGGCGGCTGATTTGAGAGCATCAATTTGG
AATCAAATGGCTGATGCTGGCATCAAGTTTATCCCCAGCAATACTTTCTC
TTACTACGATCAAGTGTTGGACACCACGGCCATGCTCGGTGCTGTGCCGC
CTAGGTACAGTTGGAACGGTGGCGAGATTGGTTTCGATGTTTATTTCTCT
ATGGCTCGAGGTAACGCCTCTGTTCCCGCCA
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