FC924910

Overview
NameFC924910
Unique NameFC924910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3647 contig Ccv1_Contig3647:1..468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924910 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.118e-28
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 3
Query:   90 TSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKSSTDPRSKSIPGVNIPNRPTGQRPETAPPPE 422
            T   ++ P S++N + E+  FECNIC D A+D +V+LCGHLFCWPCL +WL    N + CPVCK+ I+  K+VP+YGRG  S+DPR K      +P RP GQR E  PPP+
Sbjct:    5 TKAPSEEPTSSSNKD-ESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE--PPPQ 106          
BLAST of FC924910 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   72 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 404
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASASTENSSAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of FC924910 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   72 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 404
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of FC924910 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.680e-27
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   72 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 404
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of FC924910 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.680e-27
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   72 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 404
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of FC924910 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.310e-26
Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   72 SSFGESTSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 404
            SS    TS S+ +  + +N+N +   FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:   14 SSSTGGTSGSSSSNGAGDNTNQD-NTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 118          
BLAST of FC924910 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.235e-26
Identity = 57/120 (47.50%), Postives = 75/120 (62.50%), Query Frame = 3
Query:   69 ASSFGESTSRSAQNPYSNNNSNSEAGN-------FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 404
            A+S   S+S S+    +N  S  E+G        FECNIC D ++D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    5 AASESSSSSSSSSAGAANGQSAGESGGGGAQDSTFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 118          
BLAST of FC924910 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.038e-23
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  120 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRP 401
            N      +  FECNIC + A++ +V++CGHL+CWPCL++WL    + +ECPVCKA I  EK+VPLYGRG +   DPR K+      P RP GQRP
Sbjct:   15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
BLAST of FC924910 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.038e-23
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  120 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRP 401
            N      +  FECNIC + A++ +V++CGHL+CWPCL++WL    + +ECPVCKA I  EK+VPLYGRG +   DPR K+      P RP GQRP
Sbjct:   15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
BLAST of FC924910 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  111 PYSNNNSNSEAG-NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRP 401
            P   N     AG  FECNIC + A++ +V++CGHL+CWPCL++WL      +ECPVCKA I  EK+VPLYGRG +   DPR K+      P RP GQRP
Sbjct:   11 PEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
The following BLAST results are available for this feature:
BLAST of FC924910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RNF5_CAEEL3.118e-2851.35RING finger protein 5 OS=Caenorhabditis elegans GN... [more]
RN185_RAT3.447e-2748.76RING finger protein 185 OS=Rattus norvegicus GN=Rn... [more]
RN185_MOUSE3.447e-2748.76RING finger protein 185 OS=Mus musculus GN=Rnf185 ... [more]
RN185_PONAB7.680e-2748.76RING finger protein 185 OS=Pongo abelii GN=RNF185 ... [more]
RN185_HUMAN7.680e-2748.76RING finger protein 185 OS=Homo sapiens GN=RNF185 ... [more]
RN185_CHICK1.310e-2650.00RING finger protein 185 OS=Gallus gallus GN=RNF185... [more]
RN185_DANRE2.235e-2647.50RING finger protein 185 OS=Danio rerio GN=rnf185 P... [more]
RNF5_RAT1.038e-2350.53E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegi... [more]
RNF5_MOUSE1.038e-2350.53E3 ubiquitin-protein ligase RNF5 OS=Mus musculus G... [more]
RNF5_HUMAN1.356e-2351.52E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YN01FM1 TF Citrus clementina cDNA clone KN0AAP6YN01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924910 ID=FC924910; Name=FC924910; organism=Citrus clementina; type=EST; length=468bp
TCGATTCCCAAATCGGTCGGTCGATTTCTTCATTTTGAAGGCATTTGGGT
TTTTGAAATCTAGTGATGGCAAGTAGTTTTGGGGAATCAACAAGCAGGTC
GGCCCAAAACCCTTATTCTAACAACAATAGTAATAGTGAAGCTGGTAACT
TCGAATGCAATATTTGCTTTGACTTAGCTCAAGATCCTATTGTAACTTTG
TGCGGTCATCTTTTCTGCTGGCCCTGCCTTTACAAATGGCTCCACGGTCA
CTCAAATTATCGGGAGTGCCCAGTGTGTAAGGCCACAATTGAGGAGGAGA
AGCTCGTGCCCTTGTATGGCAGGGGAAAATCATCAACTGACCCCAGATCA
AAATCCATCCCTGGTGTTAATATTCCGAACCGTCCTACAGGGCAGAGGCC
TGAAACTGCTCCTCCACCAGAGCCAAGTCATTTTCAGCATCAACATGGAT
TTGGCTTTATGGGAGGCT
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