FC924912

Overview
NameFC924912
Unique NameFC924912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3648 contig Ccv1_Contig3648:1..460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924912 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.200e-27
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 3
Query:  165 DQMVNTNEGDSSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCMCVPPGTSGHLEVCPCYATMTTHHGRR*CP 398
            DQ+ +    +++Y    IDCG AC ARC+LSSRP LC+RACGTCCARC CVPPGTSG+ E CPCYA++TTH  +R CP
Sbjct:   27 DQVTSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of FC924912 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.271e-23
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 3
Query:  216 IDCGAACKARCQLSSRPNLCHRACGTCCARCMCVPPGTSGHLEVCPCYATMTTHHGRR*CP 398
            IDCG+AC ARC+LS RP LCHRACGTCC RC CVPPGT G+ + C CYA++TTH GRR CP
Sbjct:   38 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of FC924912 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.315e-20
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  216 IDCGAACKARCQLSSRPNLCHRACGTCCARCMCVPPGTSGHLEVCPCYATMTTHHGRR*CP 398
            IDCG  CK RC  SSRPNLC RAC +CC RC CVPPGT+G+  +CPCYA++TT  GR  CP
Sbjct:   39 IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of FC924912 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.315e-20
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  216 IDCGAACKARCQLSSRPNLCHRACGTCCARCMCVPPGTSGHLEVCPCYATMTTHHGRR*CP 398
            IDCG  CK RC  SSR  LC RAC +CC+RC CVPPGTSG+  +CPCYA++TTH GR  CP
Sbjct:   39 IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of FC924912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU7.200e-2762.82Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH1.271e-2372.13Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH1.315e-2065.57Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH1.315e-2065.57Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YN03FM1 TF Citrus clementina cDNA clone KN0AAP6YN03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924912 ID=FC924912; Name=FC924912; organism=Citrus clementina; type=EST; length=460bp
AGAAAAATTCCCTTTTTCAAATAGCTAGGTATCAGTTACTCCGATCAAAG
CCCTACTTTCAATAGTTTCTAGCATTTAAGCTAGCCTTGGCCATCTCGTC
GTCCAAGGCTTTCATTGCTTCAATTCTCCTCTCACTTATTCTTGTTCTCC
ATCTTGTTGCAGCTGATCAGATGGTTAACACAAACGAAGGAGATAGCAGT
TATCCCACTCCAACAATTGACTGTGGAGCTGCATGCAAGGCCAGGTGCCA
GTTATCGTCGAGGCCAAACTTGTGTCACAGGGCATGTGGAACCTGCTGTG
CCCGTTGCATGTGTGTTCCTCCGGGCACTTCAGGCCATCTTGAAGTCTGC
CCTTGCTACGCCACCATGACCACTCACCATGGCAGACGCTAGTGCCCTTA
AAACAATGAATGTGCATGATACTTGATACATGCACCTGTCCGTCGCTGCT
TGTGGCTACT
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