FC924914

Overview
NameFC924914
Unique NameFC924914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3649 contig Ccv1_Contig3649:4..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924914 vs. ExPASy Swiss-Prot
Match: CARKD_PONAB (Carbohydrate kinase domain-containing protein OS=Pongo abelii GN=CARKD PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.514e-35
Identity = 77/192 (40.10%), Postives = 114/192 (59.38%), Query Frame = 2
Query:   95 SSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYSSPRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFK 670
            S   + E +KW+ R   LVVGPGLGRD  LL  V  I++ ++  ++P+VID DGL+LV     L+ GY  AVLTPN  E+ RL   VL   ++  D+   +  L++ +G VT++QKG+ D++S+G+     S   S RRCGGQGD+LSGS+ V + WA   G   T+  +P ++      +L R+    AF+
Sbjct:  113 SRSAVHEAEKWLPRLHALVVGPGLGRDDALLRNVQGILEASKARDIPVVIDADGLWLVAQQPALIQGYRKAVLTPNHMEFSRLYDAVLRGPMDSNDSHGSVLRLSQALGNVTVVQKGERDILSNGQQVLVCSQEGSSRRCGGQGDLLSGSLGVLVHWALLAGPEKTNGSSPLLVAAFGACSLTRQCNHQAFQ 304          
BLAST of FC924914 vs. ExPASy Swiss-Prot
Match: CARKD_MOUSE (Carbohydrate kinase domain-containing protein OS=Mus musculus GN=Carkd PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.590e-35
Identity = 77/192 (40.10%), Postives = 113/192 (58.85%), Query Frame = 2
Query:   95 SSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYSSPRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFK 670
            SS  + EV+KW+ R   LVVGPGLGRD  LL  V  I++  +  ++P+VID DGL+LV     L+  Y  A+LTPN  E+ RL + VL+  ++  D       L++ +G +T++QKG+ DLIS+G+     +   S RRCGGQGD+LSGS+ V + WA   G   T+  +P ++       L R+    AF+
Sbjct:  127 SSNAVEEVEKWLPRLHALVVGPGLGRDDLLLNNVRGILESTKARDIPVVIDADGLWLVAQQPALIHSYHKAILTPNHVEFSRLWEAVLSSPMDSNDLKGSTLKLSQALGNITVVQKGEQDLISNGQQVLVCNQEGSSRRCGGQGDLLSGSLGVMVHWALRAGPEKTNGSSPLLVAAWGACTLTRECNRQAFQ 318          
BLAST of FC924914 vs. ExPASy Swiss-Prot
Match: CARKD_HUMAN (Carbohydrate kinase domain-containing protein OS=Homo sapiens GN=CARKD PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.590e-35
Identity = 78/192 (40.62%), Postives = 115/192 (59.90%), Query Frame = 2
Query:   95 SSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYSSPRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFK 670
            S   + EV+KW+ R   LVVGPGLGRD  LL  V  I++ ++  ++P+VID DGL+LV     L+ GY  AVLTPN  E+ RL   VL   ++  D+   +  L++ +G VT++QKG+ D++S+G+     S   S RRCGGQGD+LSGS+ V + WA   G   T+  +P ++      +L R+    AF+
Sbjct:  131 SPNAVHEVEKWLPRLHALVVGPGLGRDDALLRNVQGILEVSKARDIPVVIDADGLWLVAQQPALIHGYRKAVLTPNHVEFSRLYDAVLRGPMDSDDSHGSVLRLSQALGNVTVVQKGERDILSNGQQVLVCSQEGSSRRCGGQGDLLSGSLGVLVHWALLAGPQKTNGSSPLLVAAFGACSLTRQCNHQAFQ 322          
BLAST of FC924914 vs. ExPASy Swiss-Prot
Match: YCB3_SCHPO (Uncharacterized protein C61.03 OS=Schizosaccharomyces pombe GN=SPCC61.03 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31
Identity = 78/188 (41.49%), Postives = 118/188 (62.77%), Query Frame = 2
Query:  128 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYSSPRRCGGQGDILSGSVAVFLSWARA---KGKATTSQMNP---TVLGCIAGSALLRKAASLAFKD 673
            M R   +V+GPGLGRD ++ E +++++++AR++++P+VID DGL+L+    +LVSGY   +LTPNV E+KRL  K+   ++   D P+    LA ++  + I+QKG+SD+ISDG  A + S+    +RCGGQGDIL+G +A FL+W  A   K   T   M+      L     SA  R  + LAFK+
Sbjct:  110 MGRLHAIVIGPGLGRDEWMQEIMAKVIEYARKNDMPMVIDADGLWLIQQRPELVSGYHNVILTPNVIEFKRLCDKL---DIKS-DGPDACNQLAGKL-NLLIIQKGQSDIISDGATAYACSVPGGLKRCGGQGDILTGILATFLAWRHAYLSKEWDTEGNMDAKECLFLAAFGASACTRWCSRLAFKE 292          
BLAST of FC924914 vs. ExPASy Swiss-Prot
Match: YNH2_CAEEL (Uncharacterized protein R107.2 OS=Caenorhabditis elegans GN=R107.2 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.760e-24
Identity = 78/190 (41.05%), Postives = 111/190 (58.42%), Query Frame = 2
Query:  128 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLA-VLTPNVNEYKRLVQKVLNCE--VNDRDAPELLQSLAKQIG---GVTILQKGKSDLI--SDGEIAKSVSIYSSPRRCGGQGDILSGSVAVFLSWARAK-GKATTSQMNPTVLGCIAGSALLRKAASLAFK 670
            + R D +V+GPGLGR+P +   + E+ +  R  +VP VIDGDGL+ V+  I+       A VLTPN+ E+ RL +  L  E  +N R+  + LQ LA ++     VTI  KG+ DL+   +GE++K  S  SS RRCGGQGD+ +GS+ +FL WA+   G   TS  +      IA S L+R A   AF+
Sbjct:   85 LSRMDAIVIGPGLGRNPNIWPLMQELFEFVRNRDVPFVIDGDGLWFVSEHIEKFPRQMSATVLTPNIVEFSRLCKSALGEEDVLNVRNNSQ-LQHLAAELSRKMNVTIYLKGEVDLVVTPNGEVSK-CSTESSLRRCGGQGDVTAGSLGLFLYWAKKNLGDDWTSAHHE---AGIASSWLVRTAGRRAFE 269          
BLAST of FC924914 vs. ExPASy Swiss-Prot
Match: YKP1_YEAST (Uncharacterized protein YKL151C OS=Saccharomyces cerevisiae GN=YKL151C PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.173e-22
Identity = 73/228 (32.02%), Postives = 123/228 (53.95%), Query Frame = 2
Query:   74 DEERRRISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKH---ARQSNVPIVIDGDGLFLVTNSI---DLVSGYP--LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSV---SIYSSPRRCGGQGDILSGSVAVFLSWARA-----------KGKATTSQ-----MNPTVLGCIAGSALLRKAASLAFKDK 676
            DE+R++I+S +        +R   +V+GPGLGRDP +L+ + +I+++     +  +P+VID DGLFLVT      +++  YP    +LTPNV E+KRL   +        D+   + SL  Q     +++KG+SD I   +  K +   S   S +R GGQGD L+G+++  L+++RA           KG+++  +     ++  +L C AG  + R+ + L FK K
Sbjct:  100 DEQRKKINSLL--------DRIHVVVIGPGLGRDPLMLKSIKDIIRYILEKHEGKIPLVIDADGLFLVTQDSEVKEMLKSYPKGRVILTPNVVEFKRLCDAI----GKKGDSHSEMGSLIAQELNCIVVEKGQSDKIFSPDSEKDMLTNSEEGSNKRVGGQGDTLTGAISCMLAFSRAMYDFKICEQEEKGESSNDKPLKNWVDYAMLSCYAGCTITRECSRLGFKAK 315          
The following BLAST results are available for this feature:
BLAST of FC924914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CARKD_PONAB3.514e-3540.10Carbohydrate kinase domain-containing protein OS=P... [more]
CARKD_MOUSE4.590e-3540.10Carbohydrate kinase domain-containing protein OS=M... [more]
CARKD_HUMAN4.590e-3540.63Carbohydrate kinase domain-containing protein OS=H... [more]
YCB3_SCHPO1.058e-3141.49Uncharacterized protein C61.03 OS=Schizosaccharomy... [more]
YNH2_CAEEL4.760e-2441.05Uncharacterized protein R107.2 OS=Caenorhabditis e... [more]
YKP1_YEAST1.173e-2232.02Uncharacterized protein YKL151C OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YN05FM1 TF Citrus clementina cDNA clone KN0AAP6YN05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924914 ID=FC924914; Name=FC924914; organism=Citrus clementina; type=EST; length=677bp
TTTGCTCTTTACAACTTATACACCTTTGGGTTGAGCATGGTTCTGTATTT
ATTTATGATGAAGTGGTTTGGAGGATGAGGAGAGAAGACGCATCTCAAGC
AAGATTCTTGCTGAGGTTGATAAATGGATGGAAAGATTTGATTGTCTTGT
TGTTGGTCCAGGCCTTGGAAGGGATCCATATCTGCTGGAATGCGTGAGTG
AAATCATGAAACATGCAAGACAGTCAAATGTTCCAATTGTAATAGATGGG
GATGGACTTTTTCTTGTAACAAACAGTATTGATCTTGTTAGTGGTTATCC
CTTAGCTGTTTTAACTCCGAATGTAAATGAATACAAGCGTCTGGTTCAGA
AAGTACTGAATTGTGAAGTGAATGACCGAGATGCTCCTGAGCTGTTACAA
TCTCTGGCCAAGCAGATAGGTGGTGTAACTATCTTGCAGAAAGGAAAATC
TGATCTCATTAGTGATGGTGAGATAGCCAAATCAGTGAGCATCTACAGTT
CCCCCAGGCGTTGTGGTGGCCAAGGTGATATCCTATCCGGAAGTGTTGCT
GTGTTTTTATCTTGGGCCCGAGCCAAAGGAAAAGCCACCACCAGTCAGAT
GAATCCAACGGTGTTGGGTTGCATTGCTGGATCTGCTCTATTGAGAAAGG
CCGCATCTCTTGCCTTCAAAGACAAGA
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