FC924947

Overview
NameFC924947
Unique NameFC924947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length486
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:306..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924947 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.785e-54
Identity = 113/161 (70.19%), Postives = 116/161 (72.05%), Query Frame = 3 
Query:    3 VLTLGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 485
            VLT GRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKIQRLVTPLTL                      EYQKLLA+RLKEQR+R
Sbjct:   67 VLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDR 227
[Close]
BLAST of FC924947 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 2.785e-54
Identity = 113/161 (70.19%), Postives = 116/161 (72.05%), Query Frame = 3 
Query:    3 VLTLGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 485
            VLT GRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG  DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTL                      +YQKLLA+RLKEQR+R
Sbjct:   67 VLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDR 227
[Close]
BLAST of FC924947 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.805e-53
Identity = 111/161 (68.94%), Postives = 116/161 (72.05%), Query Frame = 3 
Query:    3 VLTLGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 485
            VLT GRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTL                      +YQKLLA+RLKEQR+R
Sbjct:   67 VLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDR 227
[Close]
BLAST of FC924947 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 8.699e-40
Identity = 97/161 (60.25%), Postives = 104/161 (64.60%), Query Frame = 3 
Query:    3 VLTLGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 485
            VLT GRVRLLL+RGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLTL                      EYQKLLA+RLKEQRE+
Sbjct:   22 VLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTK--WKGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREK 177
[Close]
BLAST of FC924947 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.757e-32
Identity = 83/161 (51.55%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:    3 VLTLGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 485
            VLT GRVRLLL +G  C+                 CIV  +LSVLNLVI++KGE D+PGLTD+  PR  GPKRAS+IRKLFNLSKEDDVR+YV   RR  T +  K  +KAPKIQRLVTP  L                      EY KLLA RLKE +E+
Sbjct:   67 VLTNGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIIRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEK 223
[Close]
BLAST of FC924947 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.997e-32
Identity = 83/161 (51.55%), Postives = 95/161 (59.01%), Query Frame = 3 
Query:    3 VLTLGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 485
            VLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+
Sbjct:   67 VLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEK 223
[Close]
BLAST of FC924947 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.997e-32
Identity = 83/161 (51.55%), Postives = 95/161 (59.01%), Query Frame = 3 
Query:    3 VLTLGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 485
            VLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+
Sbjct:   67 VLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEK 223
[Close]
BLAST of FC924947 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.997e-32
Identity = 83/161 (51.55%), Postives = 95/161 (59.01%), Query Frame = 3 
Query:    3 VLTLGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 485
            VLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+
Sbjct:   67 VLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEK 223
[Close]
BLAST of FC924947 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.997e-32
Identity = 83/161 (51.55%), Postives = 95/161 (59.01%), Query Frame = 3 
Query:    3 VLTLGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 485
            VLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+
Sbjct:   67 VLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEK 223
[Close]
BLAST of FC924947 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.112e-32
Identity = 83/161 (51.55%), Postives = 94/161 (58.39%), Query Frame = 3 
Query:    3 VLTLGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRER 485
            VLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+       K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+
Sbjct:   67 VLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKDGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEK 223
The following BLAST results are available for this feature:
BLAST of FC924947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_ASPOF2.785e-5470.1940S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS62_ARATH2.785e-5470.1940S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS61_ARATH1.805e-5368.9440S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_TOBAC8.699e-4060.2540S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_ICTPU1.757e-3251.5540S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]
RS6_RAT2.997e-3251.5540S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE2.997e-3251.5540S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA2.997e-3251.5540S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN2.997e-3251.5540S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN5.112e-3251.5540S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YO05FM1 TF Citrus clementina cDNA clone KN0AAP6YO05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924947 ID=FC924947; Name=FC924947; organism=Citrus clementina; type=EST; length=486bp
GAGTGCTGACTCTCGGCCGTGTTCGTCTTCTGCTCCACCGTGGTACCCCT
TGCTTCCGTGGGTATGGCAGGAGAGATGGAGAGCGCAGGAGGAAGTCTGT
TCGTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAATTTGGTCATTG
TGAAAAAGGGAGAACATGACCTTCCTGGACTTACCGATACAGAAAAGCCC
AGAATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAGTTGTTCAACCT
TTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGTAGGACCT
TCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAATTCAGAGG
TTGGTAACTCCTTTGACTCTGCAAAGGAAGCGTGCAAGAATTGCAGAAAA
GAAGCAGAGAATTGCCAAGGCCAAGGCTGAAGCAGCGGAATACCAGAAGC
TCCTTGCTACCAGGTTGAAGGAGCAGCGTGAACGCC
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