FC924950

Overview
NameFC924950
Unique NameFC924950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:57..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 3.526e-53
Identity = 95/99 (95.96%), Postives = 99/99 (100.00%), Query Frame = 3 
Query:  123 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            TDKIIAEYIW+GGSGMDMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAK+F
Sbjct:   16 TDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKVF 114
[Close]
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.898e-52
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 3 
Query:  123 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            T+KIIAEYIWIGGSG+D+RSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH AAKIF
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIF 114
[Close]
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.091e-52
Identity = 93/99 (93.94%), Postives = 99/99 (100.00%), Query Frame = 3 
Query:  123 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            T+KIIAEYIWIGGSG+D+RSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 114
[Close]
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.091e-52
Identity = 93/99 (93.94%), Postives = 99/99 (100.00%), Query Frame = 3 
Query:  123 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            TD+IIAEYIWIGGSG+DMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF
Sbjct:   16 TDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 114
[Close]
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 5.091e-52
Identity = 93/99 (93.94%), Postives = 99/99 (100.00%), Query Frame = 3 
Query:  123 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            ++KIIAEYIW+GGSGMDMRSKARTLPGPV+DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAA+IF
Sbjct:   16 SEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAEIF 114
[Close]
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 6.650e-52
Identity = 93/99 (93.94%), Postives = 99/99 (100.00%), Query Frame = 3 
Query:  123 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            TDKIIAEYIWIGGSG+DMRSKARTLPGPVSDPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFRRG+NILV+CDAYTPAGEPIPTNKRHAAAK+F
Sbjct:   16 TDKIIAEYIWIGGSGLDMRSKARTLPGPVSDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGSNILVICDAYTPAGEPIPTNKRHAAAKVF 114
[Close]
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.685e-52
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 3 
Query:  123 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            T+KIIAEYIWIGGSGMD+RSKARTL GPV+DP+KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 114
[Close]
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.481e-51
Identity = 93/99 (93.94%), Postives = 98/99 (98.99%), Query Frame = 3 
Query:  123 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIF
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIF 114
[Close]
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.602e-51
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 3 
Query:  123 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            T+KIIAEYIWIGGSGMD+RSKARTL GPVSDP KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKRH AAKIF
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVSDPHKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHNAAKIF 114
[Close]
BLAST of FC924950 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.254e-50
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 3 
Query:  123 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 419
            T+KIIAEYIWIGGSGMD+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GNNILVMCD YTPAGEPIPTNKRH AAKIF
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIF 114
The following BLAST results are available for this feature:
BLAST of FC924950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLN11_ARATH3.526e-5395.96Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA_VIGAC3.898e-5294.95Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_MEDSA5.091e-5293.94Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLN14_ARATH5.091e-5293.94Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLN12_ARATH5.091e-5293.94Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA1_LOTJA6.650e-5293.94Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_NICPL8.685e-5294.95Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA4_MAIZE1.481e-5193.94Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA2_VITVI9.602e-5193.94Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLN11_ORYSJ1.254e-5092.93Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YO08FM1 TF Citrus clementina cDNA clone KN0AAP6YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924950 ID=FC924950; Name=FC924950; organism=Citrus clementina; type=EST; length=420bp
CATTAACATCCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTGTTGT
GTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATCTCCT
TAACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTACATAT
GGATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCTTCCC
GGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATGGTTC
CAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAGTGATCCTCTATCCTC
AAGCTATTTTCAAGGATCCATTCAGGAGAGGCAACAATATTCTTGTTATG
TGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAAGACA
TGCAGCTGCCAAGATTTTCA
back to top