FC924955

Overview
NameFC924955
Unique NameFC924955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1957 contig Ccv1_Contig1957:23..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: TAS_SHIFL (Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.947e-37
Identity = 82/179 (45.81%), Postives = 115/179 (64.25%), Query Frame = 3
Query:  159 MQYRKLGDSDLVISEITLGTMTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWL-KSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAA----NIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEGKV 680
            MQY ++  S L +S + LGTMTFGEQN+E ++H  L YA   GIN++D +E YP+P + ETQG T+ Y+ +WL K   R+K+IIA+KVSG S      R+N K +R D A    NI+E++  SLKRL TDY+DL Q+HWP R    FG+  Y ++   P+V +++ L A  E    GK+
Sbjct:    1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPS------RNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKI 173          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: TAS_ECOLI (Protein tas OS=Escherichia coli (strain K12) GN=tas PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.947e-37
Identity = 82/179 (45.81%), Postives = 115/179 (64.25%), Query Frame = 3
Query:  159 MQYRKLGDSDLVISEITLGTMTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWL-KSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAA----NIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEGKV 680
            MQY ++  S L +S + LGTMTFGEQN+E ++H  L YA   GIN++D +E YP+P + ETQG T+ Y+ +WL K   R+K+IIA+KVSG S      R+N K +R D A    NI+E++  SLKRL TDY+DL Q+HWP R    FG+  Y ++   P+V +++ L A  E    GK+
Sbjct:    1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPS------RNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKI 173          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: GS69_BACSU (General stress protein 69 OS=Bacillus subtilis GN=yhdN PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 64/178 (35.96%), Postives = 84/178 (47.19%), Query Frame = 3
Query:  159 MQYRKLGDSDLVISEITLGTMTFGEQ----NTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEGKV 680
            M+Y  + D+ +  S I LGT   G        EK S E +  A + GI ++D++ AY     +E  GK    I  + K   RD+VI+ATK +   + +   R        + A I E VE SLKRL TDYIDL Q+HWPD                 P VPI E     KEL D GK+
Sbjct:    1 MEYTSIADTGIEASRIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSEEIVGKA---IKEYGK---RDQVILATKTALDWKNNQLFR------HANRARIVEEVENSLKRLQTDYIDLYQVHWPD-----------------PLVPIEETAEVMKELYDAGKI 149          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: IOLS_BACSU (Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  159 MQYRKLGDSDLVISEITLGTMTFGEQN-----TEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRY 572
            M+  KLG SDL +  I LGT   G  N      E+   E++  A  NG+ +LD++  Y I       G+++  I   L+   R+ V+IATK +   + + F+ DN+         +K+SV++SLKRLNTDYIDL  IH+PD +
Sbjct:    1 MKKAKLGKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGI-------GRSEELIGEVLREFNREDVVIATKAAHRKQGNDFVFDNSPDF------LKKSVDESLKRLNTDYIDLFYIHFPDEH 130          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: YAJO_ECOLI (Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) GN=yajO PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 58/181 (32.04%), Postives = 83/181 (45.86%), Query Frame = 3
Query:  159 MQYRKLGDSDLVISEITLGTMTFGEQN--------TEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEGK 677
            MQY  LG +DL +S + LG MTFGE +         E+ S  I+  A E GIN  D++ +Y     +E  G+     A       R+ V++ATKV        F R       +  A I  S++ SL+RL  DY+D+LQIH                 +W  + PI E L A  +++  GK
Sbjct:    1 MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANSYSDGSSEEIVGRALRDFAR------REDVVVATKV--------FHRVGDLPEGLSRAQILRSIDDSLRRLGMDYVDILQIH-----------------RWDYNTPIEETLEALNDVVKAGK 150          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: ALKE_BABBO (Aldo-keto reductase (Fragment) OS=Babesia bovis PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  396 KVIIATKVSGYSERSSFLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVAL-----FGEYTYDYSKW--RPSVPIVEQLRAFKELIDEGKV 680
            KV+IATKV+  S   S+LR     L  D  NI ++V+ SL RLNTDYIDLLQ+HWPDRYV +     F E  +D        SVP+ +QL A + L+ +GK+
Sbjct:    2 KVVIATKVASRSSHLSWLRSGDCKLSKD--NILKAVDGSLSRLNTDYIDLLQLHWPDRYVPMNANGDFHEVFHDTENMIDENSVPLEDQLDALQTLLTQGKI 101          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: YRPG_BACSU (Uncharacterized oxidoreductase yrpG OS=Bacillus subtilis GN=yrpG PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 52/140 (37.14%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  159 MQYRKLGDSDLVISEITLGTMTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLK--SQPRDKVIIATKVSGYSERSSFLRDNAKVLR-VDAANIKESVEKSLKRLNTDYIDLLQIHWPDR 569
            M+Y  LG + L +S + LGTM FG    EK +  I+  A +NGI   D++  Y      +  G T+  I  W     Q R+KV++ATKV    E  S   D    +R +    I+  +E SLKRL TD+I+L Q+H  DR
Sbjct:    1 MEYTYLGRTGLRVSRLCLGTMNFGVDTDEKTAFRIMDEALDNGIQFFDTANIYG---WGKNAGLTESIIGKWFAQGGQRREKVVLATKV---YEPISDPNDGPNDMRGLSLYKIRRHLEGSLKRLQTDHIELYQMHHIDR 134          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: YQKF_BACSU (Uncharacterized oxidoreductase yqkF OS=Bacillus subtilis GN=yqkF PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 53/135 (39.26%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  159 MQYRKLGDSDLVISEITLGTMTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQPRDKVIIATKVSGYSERSS--FLRDNAKVLRVDAANIKESVEKSLKRLNTDYIDLLQIH 557
            M+ RKLG SDL ISE+ LG M+ G +  +  S  IL  A E GIN LD+++ Y        +G+ +  +   ++++  D +I+ATK     +  S  +  D +K      A IKE+V+KSL RL TDYIDL Q+H
Sbjct:    1 MRKRKLGTSDLDISEVGLGCMSLGTEKNKALS--ILDEAIELGINYLDTADLYD-------RGRNEEIVGDAIQNRRHD-IILATKAGNRWDDGSEGWYWDPSK------AYIKEAVKKSLTRLKTDYIDLYQLH 119          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 51/174 (29.31%), Postives = 91/174 (52.30%), Query Frame = 3
Query:  165 YRKLGDSDLVISEITLGT-MTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ--PRDKVIIATKVSGYSERSSFLRDNAKVLR-VDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEG 674
            YR LG S L +S + LGT +TFG Q T++ + ++++ A++NGIN+ D++E Y         GK ++ + + +K +   R  ++I TK+        F    A+  R +   +I E ++ SL+RL  DY+D++  + PD                 P+ P+ E +RA   +I++G
Sbjct:   39 YRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVY-------AAGKAEVVLGNIIKKKGWRRSSLVITTKI--------FWGGKAETERGLSRKHIIEGLKASLERLQLDYVDVVFANRPD-----------------PNTPMEETVRAMTHVINQG 180          
BLAST of FC924955 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 58/208 (27.88%), Postives = 105/208 (50.48%), Query Frame = 3
Query:   69 NVTGRRSRKLVVRTSSLKTPISAKQAE-KNAMQ-YRKLGDSDLVISEITLGT-MTFGEQNTEKESHEILSYAFENGINILDSSEAYPIPMKKETQGKTDLYIASWLKSQ--PRDKVIIATKVSGYSERSSFLRDNAKVLR-VDAANIKESVEKSLKRLNTDYIDLLQIHWPDRYVALFGEYTYDYSKWRPSVPIVEQLRAFKELIDEG 674
            + TG  +R  + +T S     S +    K  +Q YR LG S L +S + LGT +TFG Q T++ + ++++ A++NGIN+ D++E Y         GK ++ + + +K +   R  ++I TK+        F    A+  R +   +I E ++ SL+RL  +Y+D++  + PD                 P+ P+ E +RA   +I++G
Sbjct:    5 STTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVY-------AAGKAEVVLGNIIKKKGWRRSSLVITTKI--------FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPD-----------------PNTPMEETVRAMTHVINQG 180          
The following BLAST results are available for this feature:
BLAST of FC924955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TAS_SHIFL4.947e-3745.81Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1[more]
TAS_ECOLI4.947e-3745.81Protein tas OS=Escherichia coli (strain K12) GN=ta... [more]
GS69_BACSU1.497e-1735.96General stress protein 69 OS=Bacillus subtilis GN=... [more]
IOLS_BACSU8.212e-1637.06Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=... [more]
YAJO_ECOLI1.549e-1432.04Uncharacterized oxidoreductase yajO OS=Escherichia... [more]
ALKE_BABBO2.023e-1447.06Aldo-keto reductase (Fragment) OS=Babesia bovis PE... [more]
YRPG_BACSU1.311e-1337.14Uncharacterized oxidoreductase yrpG OS=Bacillus su... [more]
YQKF_BACSU1.450e-1239.26Uncharacterized oxidoreductase yqkF OS=Bacillus su... [more]
KCAB2_XENLA5.508e-1229.31Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_HUMAN1.227e-1127.88Voltage-gated potassium channel subunit beta-2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YO13FM1 TF Citrus clementina cDNA clone KN0AAP6YO13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924955 ID=FC924955; Name=FC924955; organism=Citrus clementina; type=EST; length=680bp
CACATTCACAACCATTCGGTATCATCTCTCAGCTTAAACTAACGCGCCAC
TCGATACAGCCACTGTCAAACGTGACGGGAAGAAGAAGTAGGAAGCTCGT
TGTCAGAACAAGTTCTTTAAAGACGCCCATCAGTGCAAAACAAGCAGAAA
AGAACGCAATGCAGTACAGGAAGCTCGGTGACTCTGATCTTGTTATCAGT
GAAATCACTCTTGGGACTATGACTTTTGGAGAACAAAATACGGAGAAGGA
ATCTCATGAAATTCTTAGTTACGCATTTGAAAACGGCATCAATATTCTTG
ACTCTTCAGAGGCTTACCCCATTCCAATGAAGAAGGAAACACAAGGAAAA
ACAGATCTCTATATTGCTAGCTGGCTGAAGTCTCAGCCCCGTGATAAGGT
TATCATTGCAACAAAAGTTTCTGGTTATTCAGAACGATCAAGTTTTTTGC
GTGACAATGCAAAAGTTTTGCGCGTCGATGCTGCTAACATAAAGGAAAGT
GTAGAGAAAAGCCTAAAACGCCTGAACACAGATTACATCGACTTACTGCA
AATTCACTGGCCAGACCGTTATGTGGCATTATTTGGTGAATACACGTATG
ATTATTCCAAATGGAGGCCAAGCGTGCCAATTGTAGAACAACTGAGGGCA
TTTAAAGAACTTATTGATGAAGGGAAGGTA
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